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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10700.1 | AT | galacturonic acid kinase | JGI | N/A | IEA |
| GO:0006012 | GO-bp | galactose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0046835 | GO-bp | carbohydrate phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004335 | GO-mf | galactokinase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0005534 | GO-mf | galactose binding | EnsemblGenomes | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016773 | GO-mf | phosphotransferase activity, alcohol group as acceptor | EnsemblGenomes | N/A | IEA |
| KOG0631 | KOG | Galactokinase | JGI | N/A | IEA |
| PTHR10457 | Panther | MEVALONATE KINASE/GALACTOKINASE | JGI | N/A | IEA |
| PTHR10457:SF7 | Panther | N-ACETYLGALACTOSAMINE KINASE | JGI | N/A | IEA |
| PF00288 | PFAM | GHMP kinases N terminal domain | JGI | N/A | IEA |
| PF08544 | PFAM | GHMP kinases C terminal | JGI | N/A | IEA |
| PWY-4 | SoyCyc9 | UDP-α-D-galacturonate biosynthesis II (from D-galacturonate) | Plant Metabolic Network | ISS | |
| GN7V-41067 | SoyCyc9-rxn | galacturonokinase | Plant Metabolic Network | ISS |
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Glyma.08g028600 not represented in the dataset |
Glyma.08g028600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g222000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g03240 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g028600.2 sequence-type=transcript locus=Glyma.08g028600 ID=Glyma.08g028600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TGATTCTATACAAGAAATTTGAGGATTGATTTGGTTGTGTTTAAATGGGAAGAAAAAGAGAGGAATTTTTGACATCTCGTAAATAATGATAATAATATCACGTCATACTCATACAAAGTGCGTGCCATTCGATACCAAAAATTAATGCGTTGTCTACTGCGAGTTGTCTGATATTGCACCTTCACCAACCGTTGATCGTTTTCATTTTATATATGTGCTTCTGTTCGTTTTCCAAATCTCCTCTTTGTTTCTGAATCTTCCCTTCGCAGTTGCAGAGATGGCTTCTCGCTGCTGGCCTTCCGATGCCGAGCTAAATGAGTTGAGAGAGAGAGTTTCGAAAATAGGGGATCTGAATAAAGAGGAAGTTCGAGTTGTGGTATCTCCCTATCGAATATGTCCTTTGGGGGCACACATTGATCATCAGGGTGGGATCGTTTCAGCTATGACAATCAATATGGGAGTACTTCTGGGGTTTGCTCCTTCTGGCAGTAACCAGGTTGTAATTCGCTCAGGACAATTTGAGGGAGAAGTTAAGTTCAGAGTTGATGAGATTCAGAAGCCAAAAGATAAAAATTTGGACAAAGATTCATCAGAGCTACAGGAACAATGTAACTGGGGGCGTTATGCTAGAGGAGCCGTATATGCACTAAAGAGTAGCGGAAACATTCTTTCTAAGGGTATCATAGGATACATATGTGGTTCTGAAGGTCTGGACAGTTCGGGCTTAAGCTCTTCTGCTGCAACCAAAGATTATAAACTTATTTACCAACCAAAGGTTCTAGAATACAACGAGAGTGGGCAGCCAAAAGCAACCAGAATATTGTTGGCACTTTCGGGGTTGAAGCAAGCTTTGACGAATAACCCTGGATATAACAAGCGAGTTGTAGAGTGTCGAGAGGCCGCACAAATTCTTCTTGAAGCATCTGGAGATTACACAACAGAGCCCATCCTATCTAACGTTGATCCAGAAGTATATGACACTCACAAGCACAAATTAGAACCCAATCTAGCCAAAAGAGCGGAGCATTATTTCTCAGAGAATATGCGAGTTATGAAAGGAGTTGAGGCTTGGGCGATGGGCAATTTAAAAGATTTTGGAATGCTTATTACAGCTTCTGGTCGGAGTTCCATTCAAAATTATGAATGTGGTTGTGAACCTCTGATTCAACTGTATGAGATCCTTCTGAGGGCTCCCGGTGTATTGGGAGCGCGCTTCAGTGGTGCTGGGTTTAGAGGGTGTTGCCTTGCATTTGTGGAGGCTGACCTTGCAACTGAAGCTGCATCATTTGTCAGGAGGGAATATCTCAAGGTACAGCCAGAGTTAGCAAGCCAAATAAGCAAAGACACAGCAGTTTTGATATGTGAATCTGGCGATTGTGCACGTGTAATTTAAACACCATTGTTGCCGTTAATACTTGTATTGCATCATCATTCTTATAATTGTGATCGCAGCTGTCAATCTCATTGTAATTCTATCAAATCTTTTTATTGTTTTCATGTATTTCGTGGCCTAGAATAAGCTCACGTTACATTATTAGATTTGAAAGAGGTGTATTTTAGATGGCGAAATGTAGTTATAATCCTTAGATTATAAAATTAATATAACAGACTTTTAATAGTTTTGTAACTTATTACATATTTTAGAGgagtaaatagacattttggtccctgactttcgatcctttaacaaattagttcttatctttttgaaa
>Glyma.08g028600.1 sequence-type=CDS polypeptide=Glyma.08g028600.1.p locus=Glyma.08g028600 ID=Glyma.08g028600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTCGCTGCTGGCCTTCCGATGCCGAGCTAAATGAGTTGAGAGAGAGAGTTTCGAAAATAGGGGATCTGAATAAAGAGGAAGTTCGAGTTGTGGTATCTCCCTATCGAATATGTCCTTTGGGGGCACACATTGATCATCAGGGTGGGATCGTTTCAGCTATGACAATCAATATGGGAGTACTTCTGGGGTTTGCTCCTTCTGGCAGTAACCAGGTTGTAATTCGCTCAGGACAATTTGAGGGAGAAGTTAAGTTCAGAGTTGATGAGATTCAGAAGCCAAAAGATAAAAATTTGGACAAAGATTCATCAGAGCTACAGGAACAATGTAACTGGGGGCGTTATGCTAGAGGAGCCGTATATGCACTAAAGAGTAGCGGAAACATTCTTTCTAAGGGTATCATAGGATACATATGTGGTTCTGAAGGTCTGGACAGTTCGGGCTTAAGCTCTTCTGCTGCAGTTGGAGTGGCTTACCTCATGGCTTTGCAATATGCAAATGATTTAGTAATATCTCCCACAGAACTTATTGAATATGATAGGTTGATTGAGAATGAATATTTGGGTCTGAAAAATGGCATAATGGACCAATCAGCTATTTTGCTTTCAAGCCATGGTTGTTTGATGTGCATGAATTGCAAGACCAAAGATTATAAACTTATTTACCAACCAAAGGTTCTAGAATACAACGAGAGTGGGCAGCCAAAAGCAACCAGAATATTGTTGGCACTTTCGGGGTTGAAGCAAGCTTTGACGAATAACCCTGGATATAACAAGCGAGTTGTAGAGTGTCGAGAGGCCGCACAAATTCTTCTTGAAGCATCTGGAGATTACACAACAGAGCCCATCCTATCTAACGTTGATCCAGAAGTATATGACACTCACAAGCACAAATTAGAACCCAATCTAGCCAAAAGAGCGGAGCATTATTTCTCAGAGAATATGCGAGTTATGAAAGGAGTTGAGGCTTGGGCGATGGGCAATTTAAAAGATTTTGGAATGCTTATTACAGCTTCTGGTCGGAGTTCCATTCAAAATTATGAATGTGGTTGTGAACCTCTGATTCAACTGTATGAGATCCTTCTGAGGGCTCCCGGTGTATTGGGAGCGCGCTTCAGTGGTGCTGGGTTTAGAGGGTGTTGCCTTGCATTTGTGGAGGCTGACCTTGCAACTGAAGCTGCATCATTTGTCAGGAGGGAATATCTCAAGGTACAGCCAGAGTTAGCAAGCCAAATAAGCAAAGACACAGCAGTTTTGATATGTGAATCTGGCGATTGTGCACGTGTAATTTAA >Glyma.08g028600.2 sequence-type=CDS polypeptide=Glyma.08g028600.2.p locus=Glyma.08g028600 ID=Glyma.08g028600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTCGCTGCTGGCCTTCCGATGCCGAGCTAAATGAGTTGAGAGAGAGAGTTTCGAAAATAGGGGATCTGAATAAAGAGGAAGTTCGAGTTGTGGTATCTCCCTATCGAATATGTCCTTTGGGGGCACACATTGATCATCAGGGTGGGATCGTTTCAGCTATGACAATCAATATGGGAGTACTTCTGGGGTTTGCTCCTTCTGGCAGTAACCAGGTTGTAATTCGCTCAGGACAATTTGAGGGAGAAGTTAAGTTCAGAGTTGATGAGATTCAGAAGCCAAAAGATAAAAATTTGGACAAAGATTCATCAGAGCTACAGGAACAATGTAACTGGGGGCGTTATGCTAGAGGAGCCGTATATGCACTAAAGAGTAGCGGAAACATTCTTTCTAAGGGTATCATAGGATACATATGTGGTTCTGAAGGTCTGGACAGTTCGGGCTTAAGCTCTTCTGCTGCAACCAAAGATTATAAACTTATTTACCAACCAAAGGTTCTAGAATACAACGAGAGTGGGCAGCCAAAAGCAACCAGAATATTGTTGGCACTTTCGGGGTTGAAGCAAGCTTTGACGAATAACCCTGGATATAACAAGCGAGTTGTAGAGTGTCGAGAGGCCGCACAAATTCTTCTTGAAGCATCTGGAGATTACACAACAGAGCCCATCCTATCTAACGTTGATCCAGAAGTATATGACACTCACAAGCACAAATTAGAACCCAATCTAGCCAAAAGAGCGGAGCATTATTTCTCAGAGAATATGCGAGTTATGAAAGGAGTTGAGGCTTGGGCGATGGGCAATTTAAAAGATTTTGGAATGCTTATTACAGCTTCTGGTCGGAGTTCCATTCAAAATTATGAATGTGGTTGTGAACCTCTGATTCAACTGTATGAGATCCTTCTGAGGGCTCCCGGTGTATTGGGAGCGCGCTTCAGTGGTGCTGGGTTTAGAGGGTGTTGCCTTGCATTTGTGGAGGCTGACCTTGCAACTGAAGCTGCATCATTTGTCAGGAGGGAATATCTCAAGGTACAGCCAGAGTTAGCAAGCCAAATAAGCAAAGACACAGCAGTTTTGATATGTGAATCTGGCGATTGTGCACGTGTAATTTAA
>Glyma.08g028600.1.p sequence-type=predicted peptide transcript=Glyma.08g028600.1 locus=Glyma.08g028600 ID=Glyma.08g028600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASRCWPSDAELNELRERVSKIGDLNKEEVRVVVSPYRICPLGAHIDHQGGIVSAMTINMGVLLGFAPSGSNQVVIRSGQFEGEVKFRVDEIQKPKDKNLDKDSSELQEQCNWGRYARGAVYALKSSGNILSKGIIGYICGSEGLDSSGLSSSAAVGVAYLMALQYANDLVISPTELIEYDRLIENEYLGLKNGIMDQSAILLSSHGCLMCMNCKTKDYKLIYQPKVLEYNESGQPKATRILLALSGLKQALTNNPGYNKRVVECREAAQILLEASGDYTTEPILSNVDPEVYDTHKHKLEPNLAKRAEHYFSENMRVMKGVEAWAMGNLKDFGMLITASGRSSIQNYECGCEPLIQLYEILLRAPGVLGARFSGAGFRGCCLAFVEADLATEAASFVRREYLKVQPELASQISKDTAVLICESGDCARVI* >Glyma.08g028600.2.p sequence-type=predicted peptide transcript=Glyma.08g028600.2 locus=Glyma.08g028600 ID=Glyma.08g028600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASRCWPSDAELNELRERVSKIGDLNKEEVRVVVSPYRICPLGAHIDHQGGIVSAMTINMGVLLGFAPSGSNQVVIRSGQFEGEVKFRVDEIQKPKDKNLDKDSSELQEQCNWGRYARGAVYALKSSGNILSKGIIGYICGSEGLDSSGLSSSAATKDYKLIYQPKVLEYNESGQPKATRILLALSGLKQALTNNPGYNKRVVECREAAQILLEASGDYTTEPILSNVDPEVYDTHKHKLEPNLAKRAEHYFSENMRVMKGVEAWAMGNLKDFGMLITASGRSSIQNYECGCEPLIQLYEILLRAPGVLGARFSGAGFRGCCLAFVEADLATEAASFVRREYLKVQPELASQISKDTAVLICESGDCARVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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