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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55090.1 | AT | carbon-nitrogen hydrolase family protein | JGI | N/A | IEA |
| GO:0006807 | GO-bp | nitrogen compound metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006807 | GO-bp | nitrogen compound metabolic process | JGI | N/A | IEA |
| GO:0009435 | GO-bp | NAD biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003952 | GO-mf | NAD+ synthase (glutamine-hydrolyzing) activity | EnsemblGenomes | N/A | IEA |
| GO:0004359 | GO-mf | glutaminase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016810 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | EnsemblGenomes | N/A | IEA |
| GO:0016810 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | JGI | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| KOG2303 | KOG | Predicted NAD synthase, contains CN hydrolase domain | JGI | N/A | IEA |
| PTHR23090 | Panther | NH(3)/GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE | JGI | N/A | IEA |
| PTHR23090:SF1 | Panther | JGI | N/A | IEA | |
| PF00795 | PFAM | Carbon-nitrogen hydrolase | JGI | N/A | IEA |
| PF02540 | PFAM | NAD synthase | JGI | N/A | IEA |
| PWY-5381 | SoyCyc9 | pyridine nucleotide cycling (plants) | Plant Metabolic Network | ISS | |
| PYRIDNUCSYN-PWY | SoyCyc9 | NAD biosynthesis I (from aspartate) | Plant Metabolic Network | ISS | |
| GN7V-58458 | SoyCyc9-rxn | NAD+ synthase (glutamine-hydrolysing) | Plant Metabolic Network | ISS |
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Glyma.08g025800 not represented in the dataset |
Glyma.08g025800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g219500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g02950 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g025800.1 sequence-type=CDS polypeptide=Glyma.08g025800.1.p locus=Glyma.08g025800 ID=Glyma.08g025800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGGCTATTGAAGGTTGCCGCATCTAATCTGAACCAATGGGCGATGGACTTCGATTGCAACGCCAAGCAAATCAAAGAGTCCATAGCGAAGGCCAAAGAAGCCGGCGCTGCCATTAGGCTCGGACCCGAACTCGAGATTCCTGGTTATGGCTGCGAAGACCACTTCTTAGAGCTCGACACAGTTAACCATTCATGGGAGTGCCTGAAAGATTTACTGCTTGGAGATTGGACTGATGGCATTGTGTGTAGCTTTGGCATGCCCGTTATCAAAGGCTCCGAGCGCTACAATTGTCAGGTTTTCTGTCTCAATCGAAAGATTATTATGATACGACCCAAGATGTCTCTTGCCAATGATGGTAATTATAGAGAACTGAGATGGTTCACTGCTTGGAAGCAGAGGGATCAACTCGTCGATTTTCAGTTGCCACCTGAATTTTCCCAGGCAATAGGCCAAAATTCTGTTCCATTCGGTTATGGCTTCATTAAGTTTCAAGACACAGCTATTGCGGCTGAAGTTTGTGAAGAGCTTTTTACTCCAACTCCCCCTCATTCTGAACTTGCATTGAATGGGGTTGAAGTGTTTATGAATGCAAGTGGAAGTCACCACCAACTTAGAAAGCTCGATGTTCGTCTTCGTGCTTTTATAGGTGCCACTCAAACTCGCGGAGGGGTTTACATCTATAGTAATCACCAAGGCTGTGATGGCAGTCGCCTTTACTATGATGGCTGTGCTAGTGTTGTGGTAAATGGAGACGTCGTCGCTCAGGGTTCACAATTTTCTTTAAAAGATGTTGAAGTTGTGGTTGCTCAAATAGATCTAGATGTGGTTGCAAGTCTTAGAGGATCTTTAAGTAGCTTCCAAGAGCAAGCAAGTTGTAAAACAAAGGTTCCTTCAGTGGAAGTACCTTTCAGTCTCTGTCTTCCTTTTAACCTTAAAACACACCTTTCTCTCCCACTTAAGATAAAGTACCACACTCCTGAGGAGGAAATAGCATTTGGACCTGGTTGCTGGTTATGGGACTACTTAAGAAGAAGTGGAGCATCTGGTTTTCTGCTTCCTCTTTCTGGTGGAGCAGACAGTTCCTCCGTCGCTGCAATTGTTGGGTGCATGTGCCAGCTGGTTGTGAAAGAAATTGCAAATGGGGACGAGCAAGTTAAAGCTGATGCAATACGAATAGGAAACTATAAGGATGGCCTGTATCCTACAGACAGCAGAGAATTTGCTAAACGAATATTCTATACTGTGTTTATGGGATCTGAAAACAGTTCCGAAATGACAAGGTCACGAGCCAAGGTGCTGGCTGATGAAATTGGTTCATGGCACCTTGATGTTAGCATTGACGTAGTTGTGTCTGCTTTTTTGTCATTGTTCCAAACACTTACAGGAAAGCGACCACGGTATAAGGTAGATGGTGGATCTAATGTTGAAAATTTAAGCTTGCAGAACATTCAAGCTCGAATCAGAATGGTGCTAGCTTTCATGTTAGCATCACTCTTACCTTGGGTTCACAGCAAGCCTGGGTTTTATCTTGTCTTGGGGAGCTCCAATGTGGATGAAGGGTTACGTGGTTACTTGACCAAGTATGATTGCAGCTCAGCAGATATAAATCCAATTGGTAGTATAAGTAAGCAAGACCTTCGGGCATTCTTGCAATGGGCAGCCATCCATCTTGGTTACTCATCTTTGGCAGATATTGAAGCAGCTCCACCCACAGCTGAACTGGAGCCTATACGTTCTAATTACAGTCAGCTTGATGAAGTCGATATGGGAATGACTTACGAGGAGCTATCAGTTTATGGAAGACTACGAAAAATTTTCCGTTGTGGTCCAGTTTCCATGTTCCAGAATCTATGCTACAGATGGGGTGCAAGATTGACACCATCACAAGTGGCTGAAAAAGTAAAACACTTCTTCAAGTATTATTCTATCAATCGACACAAAATGACTGTCTTGACGCCTTCCTACCATGCTGAGAGTTATTCACCAGAGGATAATAGGTTTGATCTTCGCCAGTTTCTCTATAATGCAAGATGGCCATATCAATTTAGGAAAATTGATGAACTTGTAAGTGAATTGGATGTTAAAGATGTTAAAGATTCAGGAGACCATGAGGCAATGGCAGCTACATCTGATGGTGTTGGTGGGATGGGAGTTGCCGCAGCTGGTTCAGGCAATCCTAATGTTGGATTGTAA
>Glyma.08g025800.1.p sequence-type=predicted peptide transcript=Glyma.08g025800.1 locus=Glyma.08g025800 ID=Glyma.08g025800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRLLKVAASNLNQWAMDFDCNAKQIKESIAKAKEAGAAIRLGPELEIPGYGCEDHFLELDTVNHSWECLKDLLLGDWTDGIVCSFGMPVIKGSERYNCQVFCLNRKIIMIRPKMSLANDGNYRELRWFTAWKQRDQLVDFQLPPEFSQAIGQNSVPFGYGFIKFQDTAIAAEVCEELFTPTPPHSELALNGVEVFMNASGSHHQLRKLDVRLRAFIGATQTRGGVYIYSNHQGCDGSRLYYDGCASVVVNGDVVAQGSQFSLKDVEVVVAQIDLDVVASLRGSLSSFQEQASCKTKVPSVEVPFSLCLPFNLKTHLSLPLKIKYHTPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGNYKDGLYPTDSREFAKRIFYTVFMGSENSSEMTRSRAKVLADEIGSWHLDVSIDVVVSAFLSLFQTLTGKRPRYKVDGGSNVENLSLQNIQARIRMVLAFMLASLLPWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRAFLQWAAIHLGYSSLADIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFQNLCYRWGARLTPSQVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVSELDVKDVKDSGDHEAMAATSDGVGGMGVAAAGSGNPNVGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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