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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64390.1 | AT | glycosyl hydrolase 9C2 | JGI | N/A | IEA |
| GO:0000272 | GO-bp | polysaccharide catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0030245 | GO-bp | cellulose catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004553 | GO-mf | hydrolase activity, hydrolyzing O-glycosyl compounds | EnsemblGenomes | N/A | IEA |
| GO:0004553 | GO-mf | hydrolase activity, hydrolyzing O-glycosyl compounds | JGI | N/A | IEA |
| GO:0008810 | GO-mf | cellulase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016798 | GO-mf | hydrolase activity, acting on glycosyl bonds | EnsemblGenomes | N/A | IEA |
| GO:0030246 | GO-mf | carbohydrate binding | EnsemblGenomes | N/A | IEA |
| GO:0030246 | GO-mf | carbohydrate binding | JGI | N/A | IEA |
| PTHR22298 | Panther | ENDO-1,4-BETA-GLUCANASE | JGI | N/A | IEA |
| PTHR22298:SF3 | Panther | JGI | N/A | IEA | |
| PF00759 | PFAM | Glycosyl hydrolase family 9 | JGI | N/A | IEA |
| PF09478 | PFAM | Carbohydrate binding domain CBM49 | JGI | N/A | IEA |
| GN7V-54239 | SoyCyc9-rxn | cellulase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CEL8 | endo-1,4-beta-glucanase |
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Glyma.08g022300 not represented in the dataset |
Glyma.08g022300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g216400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g02610 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g022300.1 sequence-type=CDS polypeptide=Glyma.08g022300.1.p locus=Glyma.08g022300 ID=Glyma.08g022300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAAAGCTTATTCGCATGTTCCCTTTGCTCCTTGTTCTTCTTCTGTGCCCCAATTTTGCCTTTGCTGGCCATGACTACGGCCAAGCTCTTAGCAAGAGCCTTCTGTTCTTTGAAGCTCAGAGATCTGGTTACCTTCCCCACAACCAGAGGGTCACATGGAGAGCACATTCTGGTTTGCAAGATGGCAAAGCAAGCGGGGTGGATCTAGTTGGAGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGGTTACCCATGGCGTTTACCGTTACGATGATGTCGTGGAGCATCATTGAATACGGCAAACAAATGGCTGCTAGTGGTGAACTTGGTCACGCCATGGAAGCCGTTAAGTGGGGTACGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGACAACCGACCGTCATGCCTACAAGGTCGATCCGAGCAATCCCGGTTCCGATCTCGCCGGAGAAACCGCCGCCGCAATGGCCGCCGCATCCATAGTTTTCAGACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAGCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAGTATTACTTGGATTACCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAGCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGTTCCTGATGCAAGGCAAATCTGGGCATCATGCTCCAGTTTTCGAGAGATACCAGCAGAAGGCTGAAACTTTCATGTGTTCATGCCTTGGGAAGAGTAATCGCAATGTTCAGAAGACTCCTGGTGGCCTCATCTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCATTTTTAGCCACTGTCTACTCTGACTACCTTGCTTCATCTGGTAGAAACCTGAGATGCAGTTCAGGGAATGTCCCCCCTGCTGAGCTTCTCTCCCTTGCAAAGTCTCAGGTGGACTACCTTCTTGGGGACAACCCAAGAGCTACTAGTTACATGGTGGGCTATGGAAGCAACTTCCCACAAAGGGTTCATCACAGAGGTTCATCCATTGTTTCCATCAAGGTTAACCCTTCATTTGTCAGCTGCCGTGGAGGTTATGCTACATGGTTTAGCAGCAAAAGGAGCGACCCCAACCTGCTCACTGGTGCTCTTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGAGATAACTATGAGCAGACAGAGCCAGCAACATATAACAATGCTCCTCTTATTGGTATTCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGGTTGCCAATGGAAAAACTTATTACAGATACTCAACAGTCGTGACTAACAAATCTAACAAGAGTCTCAATTCTCTCAATCTTTCAATATCCAAGCTTTATGGTCCAATCTGGGGTGTCACAAAGTCAGGTGATTCATACACATTCCCATCATGGCTCAGCTCATTATCAGCTGGCAAAAGCCTTGAATTTGTCTACATCCATTCTGCTTCTCCAGCAGATGTCTCCGTGGCGAACTACGTGTTGGCCTGA
>Glyma.08g022300.1.p sequence-type=predicted peptide transcript=Glyma.08g022300.1 locus=Glyma.08g022300 ID=Glyma.08g022300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEKLIRMFPLLLVLLLCPNFAFAGHDYGQALSKSLLFFEAQRSGYLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQANVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKVDPSNPGSDLAGETAAAMAAASIVFRRSNPAYAGELLRHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKSGHHAPVFERYQQKAETFMCSCLGKSNRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGRNLRCSSGNVPPAELLSLAKSQVDYLLGDNPRATSYMVGYGSNFPQRVHHRGSSIVSIKVNPSFVSCRGGYATWFSSKRSDPNLLTGALVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILARLGGGHGGYNQLLPVVVPAPKPAVTKPQPTPSPKTTPSPASWSGPISIEQKRTTSWVANGKTYYRYSTVVTNKSNKSLNSLNLSISKLYGPIWGVTKSGDSYTFPSWLSSLSAGKSLEFVYIHSASPADVSVANYVLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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