Glyma.08g021700

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.08g021700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.08g021700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.08g021700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1750378
stop:	1753017
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g021700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11080.1	AT	HMG (high mobility group) box protein	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
KOG0381	KOG	HMG box-containing protein	JGI	N/A	IEA
PTHR13711	Panther	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	JGI	N/A	IEA
PF00505	PFAM	HMG (high mobility group) box	JGI	N/A	IEA

Expression Patterns of Glyma.08g021700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g021700 not represented in the dataset	Glyma.08g021700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g021700

Paralog	Evidence	Comments
Glyma.05g215500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g021700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g02550	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g021700

Limit To All Plant Sequences

>Glyma.08g021700.2 sequence-type=transcript locus=Glyma.08g021700 ID=Glyma.08g021700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATACACACTGACTCACTGTTCTAATTCATTTCTGAAATAGAATTCCGTTATtctctctctctctctctTGTTTCATCGATGGGTGGCACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCTAACATCATCATAGCCACACCAATTTCGCCATCATCCGAAAAGGCGGCACAAGTTGTTCCCTCAAAGAAAAAACAAGATTCAAAGAAGCAGCAATCTTTCGAAAAAGAATTGCTGGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGTCAAGGACGAGGCTCTCAAGCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAaagataatgaagaaaagaaggataagaagaagaagGGGTGCTCTGAGAAGAAACGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCTGAATTTAAGGAAATTTCAACCATGCTAGGTGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCAGATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGGTGAATTTCAAATTAAGTAACATGAAATTGGAAGTATAGTGACAATCTAACAAGTCAAAGCTTTATTCCGTGCAGCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCTGCAACTGCATGCCAGGAGCAGAAAACCGAATAATAATTAATTGAAAAGGAAGAAAAAAACCCCTTGTGCGCATGTTCAAAATTATATTGAATATGCTATCTTCAAAATTTAGTCCTCATTAATGGCTTTCATGTAGTTGTAATTTTTTACGCAAATTCTCTTCATGCAGTTTTTATTAATCTTGAATTTGGCCATTTTTTTTAGTCTTATCTCCTTCGTGTTGTTCAATGCCTGAtttttttttttttttttcattttcatttgttAACTAACAGGGGGGGTCCCTGTGGCATCTCTCTGGTTTTAAAAAATAAAATATATTTGAATTTTTCAGG

>Glyma.08g021700.3 sequence-type=transcript locus=Glyma.08g021700 ID=Glyma.08g021700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATACACACTGACTCACTGTTCTAATTCATTTCTGAAATAGAATTCCGTTATtctctctctctctctctTGTTTCATCGATGGGTGGCACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCTAACATCATCATAGCCACACCAATTTCGCCATCATCCGAAAAGGCGGCACAAGTTGTTCCCTCAAAGAAAAAACAAGATTCAAAGAAGCAGCAATCTTTCGAAAAAGAATTGCTGGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGTCAAGGACGAGGCTCTCAAGCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGGTGAAATTTGCCTGTGTTGAaagataatgaagaaaagaaggataagaagaagaagGGGTGCTCTGAGAAGAAACGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCTGAATTTAAGGAAATTTCAACCATGCTAGGTGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCAGATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCTGCAACTGCATGCCAGGAGCAGAAAACCGAATAATAATTAATTGAAAAGGAAGAAAAAAACCCCTTGTGCGCATGTTCAAAATTATATTGAATATGCTATCTTCAAAATTTAGTCCTCATTAATGGCTTTCATGTAGTTGTAATTTTTTACGCAAATTCTCTTCATGCAGTTTTTATTAATCTTGAATTTGGCCATTTTTTTTAGTCTTATCTCCTTCGTGTTGTTCAATGCCTGAtttttttttttttttttcattttcatttgttAACTAACAGGGGGGGTCCCTGTGGCATCTCTCTGGTTTTAAAAAATAAAATATATTTGAATTTTTCAGG

Coding sequences of Glyma.08g021700

Limit To All Plant Sequences

>Glyma.08g021700.1 sequence-type=CDS polypeptide=Glyma.08g021700.1.p locus=Glyma.08g021700 ID=Glyma.08g021700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGGCACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCTAACATCATCATAGCCACACCAATTTCGCCATCATCCGAAAAGGCGGCACAAGTTGTTCCCTCAAAGAAAAAACAAGATTCAAAGAAGCAGCAATCTTTCGAAAAAGAATTGCTGGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGTCAAGGACGAGGCTCTCAAGCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAACGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCTGAATTTAAGGAAATTTCAACCATGCTAGGTGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCAGATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCTGCAACTGCATGCCAGGAGCAGAAAACCGAATAA

>Glyma.08g021700.2 sequence-type=CDS polypeptide=Glyma.08g021700.2.p locus=Glyma.08g021700 ID=Glyma.08g021700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGGCACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCTAACATCATCATAGCCACACCAATTTCGCCATCATCCGAAAAGGCGGCACAAGTTGTTCCCTCAAAGAAAAAACAAGATTCAAAGAAGCAGCAATCTTTCGAAAAAGAATTGCTGGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGTCAAGGACGAGGCTCTCAAGCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAACGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCTGAATTTAAGGAAATTTCAACCATGCTAGGTGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCAGATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGGTGA

>Glyma.08g021700.3 sequence-type=CDS polypeptide=Glyma.08g021700.3.p locus=Glyma.08g021700 ID=Glyma.08g021700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCTGAATTTAAGGAAATTTCAACCATGCTAGGTGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCAGATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCTGCAACTGCATGCCAGGAGCAGAAAACCGAATAA

Predicted protein sequences of Glyma.08g021700

Limit To All Plant Sequences

>Glyma.08g021700.1.p sequence-type=predicted peptide transcript=Glyma.08g021700.1 locus=Glyma.08g021700 ID=Glyma.08g021700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGTVVAEVPTKRGRGRRALKEKTPSTNDANIIIATPISPSSEKAAQVVPSKKKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKLKEEELENRGREQEKLQTELKKLQKLKEFKPTMNLPVLKDNEEKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANPEAEFKEISTMLGAKWKTVSAEEKKPYEGIYHAEKEAYLQVIAKEKRETEAMRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKKNKEQYALEMEAYKQKKDEEAAHFMKEEEEQMKLQKQEALQLLKKKEKTENIIKKTKQNRQKKKQNKDDKNSDPNRPKKPASSFILFSKEARKTLQEERPGISTSTLNALVSLKWKELSEEDRQFWNGQASKAMDAYKKELEEYNKSLAATACQEQKTE*

>Glyma.08g021700.2.p sequence-type=predicted peptide transcript=Glyma.08g021700.2 locus=Glyma.08g021700 ID=Glyma.08g021700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGTVVAEVPTKRGRGRRALKEKTPSTNDANIIIATPISPSSEKAAQVVPSKKKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKLKEEELENRGREQEKLQTELKKLQKLKEFKPTMNLPVLKDNEEKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANPEAEFKEISTMLGAKWKTVSAEEKKPYEGIYHAEKEAYLQVIAKEKRETEAMRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKKNKEQYALEMEAYKQKKDEEAAHFMKEEEEQMKLQKQEALQLLKKKEKTENIIKKTKQNRQKKKQNKDDKNSDPNRPKKPASSFILFR*

>Glyma.08g021700.3.p sequence-type=predicted peptide transcript=Glyma.08g021700.3 locus=Glyma.08g021700 ID=Glyma.08g021700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKDQWNEIKKANPEAEFKEISTMLGAKWKTVSAEEKKPYEGIYHAEKEAYLQVIAKEKRETEAMRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKKNKEQYALEMEAYKQKKDEEAAHFMKEEEEQMKLQKQEALQLLKKKEKTENIIKKTKQNRQKKKQNKDDKNSDPNRPKKPASSFILFSKEARKTLQEERPGISTSTLNALVSLKWKELSEEDRQFWNGQASKAMDAYKKELEEYNKSLAATACQEQKTE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain