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Report for Sequence Feature Glyma.08g017800

Feature Type:gene_model
Chromosome:Gm08
Start:1434223
stop:1441150
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g017800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63940.2AT monodehydroascorbate reductase 6 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
KOG1336 KOG Monodehydroascorbate/ferredoxin reductase JGI N/AIEA
PTHR22912Panther DISULFIDE OXIDOREDUCTASE JGI N/AIEA
PTHR22912:SF37Panther JGI N/AIEA
PF00070PFAM Pyridine nucleotide-disulphide oxidoreductase JGI N/AIEA
PF07992PFAM Pyridine nucleotide-disulphide oxidoreductase JGI N/AIEA
GN7V-58964SoyCyc9-rxn monodehydroascorbate reductase (NADH) Plant Metabolic Network ISS

Proteins Associated with Glyma.08g017800
LocusGene SymbolProtein Name
MDHAR-6 Monodehydroascorbate reductase 6, cytosolic

Expression Patterns of Glyma.08g017800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g017800 not represented in the dataset
Glyma.08g017800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g017800
ParalogEvidenceComments
Glyma.05g211500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g017800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g02100 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g017800
>Glyma.08g017800.2 sequence-type=transcript locus=Glyma.08g017800 ID=Glyma.08g017800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAGGTACCCAACTTGTAGTGCAAGAGTATTCGATTTGATTGATTGTATTACAGTGTCATTTTCCTTCATAACCGATTTCTATTTTATGATTGTGCGCAACAGTTCGCAGACTCACAATGGCCGCAATATCCAACTCCTTATCACTGAAGCACAGTTTCTCTCTGAGTCGAGCTCCTCCTTCTTCCTCTTCCATCAAATTCAAATTCAGAAGATGTTACGCCGCGTTCGCCAATGAGAATCGCGAGTACGTGATCGTTGGCGGCGGAAATGCCGCGGGATATGCTGCGCGCACTTTCGTTGAGCATGGAATGGCTGATGGTCGTCTCTGTATTGTAACCAAAGAGCCGTATGCACCTTACGAGCGTCCCGCTCTGACGAAAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCACGCCTTCCTGGTTTTCACACTTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCGGGGTGGTATAAAGAGAATGGGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCATACTTTGACAACAAGTTCTGGAAAACTTCTGAAGTATGGTTCGCTTGTTATTGCTACAGGATGTACGGCATCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGGATGTTGGAGATGCCGATGCACTAATTTTATCGTTGGAGAAAGCAAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCTGCTGTTGGTTGGAAACTTGATACAACAATCATATTCCCAGAAGATCACCTTTTGCAAAGACTGTTTACTCCTTCTCTTGCCCGGAGATATGAAGAACTCTATCAAAAGAATGGAGTCAAAATCTTGAAGGGTGCTTCCATAAAAAATTTGGAAGCTGGTTCTAATGGACATGTAGCTGCTGTGAAACTTGGAGATGGATCTCTTGTGGAGGCAGATACGGTAATTATAGGCATTGGAGCAAAACCTGCTGTGACTCCCTTTGAGAGGGTGGGCCTGAATACAGAGGTTGGTGGTATACAGGTTGATGGTCAGTTTCGGACAAGCACTCCCGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTCCCTTTGAAGATTTATAATCGTATCTCTCGAGTGGAGCATGTGGATCATGCCCGTCGCTCTGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTCACACGTATGATTATCTTCCATACTTCTACTCGAGGATTTTTGAATATGAAGGAAGCCCTAGAAAAGTGTGGTGGCAGTTCTTTGGAGACAATGTTGGAGAAACAGTTGAAATTGGAAATTTTGATCCTAAAATATCTACCTTCTGGATTGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGCCCTGAGGAATTTCAACTCCTGCCTAAACTTGCCAGAAGTCAGCCTCTGATTGATAAAGCCAAACTTCAAAATGCAACATCAGTGGAGGAGGCCCTAGAGATTGCTCGGGAATCCTTGCAAGGCGAAGCTGCTGTCTAGTACCGATCTTGGTAACATCATTCTGTAATTTATCTTCTCTTACGGCCAGATTATCAGTGACTATCTGTCATCATCTGAGTAGGGATTGCTCCTTAAGAGAATAATTTTCATTACATTCTCAGTCACCTGACATTAGTAATGGTTTTTAACTGGAATGTCTAATTTGGATTTGATCTGGTGCCATAAGGTATCCTTGAATTTTCTCAATAATTTAAGATAGCCTTTGCCTTTACACGTTACTTTTATTTTCCAGCAATGTGATTTTTGTTCTTAACTTACTACCTACAACCCTTCTTCTGAAGGGACTCCTGTAGGGAATTCTGTCTGCAGAAAGAGTTGTCTCATTTAAAATTTCAAGCCTGGACCTAAAAAGGCATATTTTCTCTTGTAATTTTTTGACTTTGGGATATAGGATCTAATAAAATTCGGTTGATGTTTGGCTTTT
Coding sequences of Glyma.08g017800
>Glyma.08g017800.1 sequence-type=CDS polypeptide=Glyma.08g017800.1.p locus=Glyma.08g017800 ID=Glyma.08g017800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTCCCCTTCAGTTCGCAGACTCACAATGGCCGCAATATCCAACTCCTTATCACTGAAGCACAGTTTCTCTCTGAGTCGAGCTCCTCCTTCTTCCTCTTCCATCAAATTCAAATTCAGAAGATGTTACGCCGCGTTCGCCAATGAGAATCGCGAGTACGTGATCGTTGGCGGCGGAAATGCCGCGGGATATGCTGCGCGCACTTTCGTTGAGCATGGAATGGCTGATGGTCGTCTCTGTATTGTAACCAAAGAGCCGTATGCACCTTACGAGCGTCCCGCTCTGACGAAAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCACGCCTTCCTGGTTTTCACACTTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCGGGGTGGTATAAAGAGAATGGGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCATACTTTGACAACAAGTTCTGGAAAACTTCTGAAGTATGGTTCGCTTGTTATTGCTACAGGATGTACGGCATCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGGATGTTGGAGATGCCGATGCACTAATTTTATCGTTGGAGAAAGCAAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCTGCTGTTGGTTGGAAACTTGATACAACAATCATATTCCCAGAAGATCACCTTTTGCAAAGACTGTTTACTCCTTCTCTTGCCCGGAGATATGAAGAACTCTATCAAAAGAATGGAGTCAAAATCTTGAAGGGTGCTTCCATAAAAAATTTGGAAGCTGGTTCTAATGGACATGTAGCTGCTGTGAAACTTGGAGATGGATCTCTTGTGGAGGCAGATACGGTAATTATAGGCATTGGAGCAAAACCTGCTGTGACTCCCTTTGAGAGGGTGGGCCTGAATACAGAGGTTGGTGGTATACAGGTTGATGGTCAGTTTCGGACAAGCACTCCCGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTCCCTTTGAAGATTTATAATCGTATCTCTCGAGTGGAGCATGTGGATCATGCCCGTCGCTCTGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTCACACGTATGATTATCTTCCATACTTCTACTCGAGGATTTTTGAATATGAAGGAAGCCCTAGAAAAGTGTGGTGGCAGTTCTTTGGAGACAATGTTGGAGAAACAGTTGAAATTGGAAATTTTGATCCTAAAATATCTACCTTCTGGATTGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGCCCTGAGGAATTTCAACTCCTGCCTAAACTTGCCAGAAGTCAGCCTCTGATTGATAAAGCCAAACTTCAAAATGCAACATCAGTGGAGGAGGCCCTAGAGATTGCTCGGGAATCCTTGCAAGGCGAAGCTGCTGTCTAG

>Glyma.08g017800.2 sequence-type=CDS polypeptide=Glyma.08g017800.2.p locus=Glyma.08g017800 ID=Glyma.08g017800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGCAATATCCAACTCCTTATCACTGAAGCACAGTTTCTCTCTGAGTCGAGCTCCTCCTTCTTCCTCTTCCATCAAATTCAAATTCAGAAGATGTTACGCCGCGTTCGCCAATGAGAATCGCGAGTACGTGATCGTTGGCGGCGGAAATGCCGCGGGATATGCTGCGCGCACTTTCGTTGAGCATGGAATGGCTGATGGTCGTCTCTGTATTGTAACCAAAGAGCCGTATGCACCTTACGAGCGTCCCGCTCTGACGAAAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCACGCCTTCCTGGTTTTCACACTTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCGGGGTGGTATAAAGAGAATGGGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCATACTTTGACAACAAGTTCTGGAAAACTTCTGAAGTATGGTTCGCTTGTTATTGCTACAGGATGTACGGCATCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGGATGTTGGAGATGCCGATGCACTAATTTTATCGTTGGAGAAAGCAAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCTGCTGTTGGTTGGAAACTTGATACAACAATCATATTCCCAGAAGATCACCTTTTGCAAAGACTGTTTACTCCTTCTCTTGCCCGGAGATATGAAGAACTCTATCAAAAGAATGGAGTCAAAATCTTGAAGGGTGCTTCCATAAAAAATTTGGAAGCTGGTTCTAATGGACATGTAGCTGCTGTGAAACTTGGAGATGGATCTCTTGTGGAGGCAGATACGGTAATTATAGGCATTGGAGCAAAACCTGCTGTGACTCCCTTTGAGAGGGTGGGCCTGAATACAGAGGTTGGTGGTATACAGGTTGATGGTCAGTTTCGGACAAGCACTCCCGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTCCCTTTGAAGATTTATAATCGTATCTCTCGAGTGGAGCATGTGGATCATGCCCGTCGCTCTGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTCACACGTATGATTATCTTCCATACTTCTACTCGAGGATTTTTGAATATGAAGGAAGCCCTAGAAAAGTGTGGTGGCAGTTCTTTGGAGACAATGTTGGAGAAACAGTTGAAATTGGAAATTTTGATCCTAAAATATCTACCTTCTGGATTGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGCCCTGAGGAATTTCAACTCCTGCCTAAACTTGCCAGAAGTCAGCCTCTGATTGATAAAGCCAAACTTCAAAATGCAACATCAGTGGAGGAGGCCCTAGAGATTGCTCGGGAATCCTTGCAAGGCGAAGCTGCTGTCTAG
Predicted protein sequences of Glyma.08g017800
>Glyma.08g017800.1.p sequence-type=predicted peptide transcript=Glyma.08g017800.1 locus=Glyma.08g017800 ID=Glyma.08g017800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSPSVRRLTMAAISNSLSLKHSFSLSRAPPSSSSIKFKFRRCYAAFANENREYVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEPYAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPGWYKENGIEMLYEDPVKDIDIEKHTLTTSSGKLLKYGSLVIATGCTASRFPEKIGGNLPGVHYIRDVGDADALILSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEDHLLQRLFTPSLARRYEELYQKNGVKILKGASIKNLEAGSNGHVAAVKLGDGSLVEADTVIIGIGAKPAVTPFERVGLNTEVGGIQVDGQFRTSTPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFYSRIFEYEGSPRKVWWQFFGDNVGETVEIGNFDPKISTFWIESGKLKGVLLESGSPEEFQLLPKLARSQPLIDKAKLQNATSVEEALEIARESLQGEAAV*

>Glyma.08g017800.2.p sequence-type=predicted peptide transcript=Glyma.08g017800.2 locus=Glyma.08g017800 ID=Glyma.08g017800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAISNSLSLKHSFSLSRAPPSSSSIKFKFRRCYAAFANENREYVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEPYAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPGWYKENGIEMLYEDPVKDIDIEKHTLTTSSGKLLKYGSLVIATGCTASRFPEKIGGNLPGVHYIRDVGDADALILSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEDHLLQRLFTPSLARRYEELYQKNGVKILKGASIKNLEAGSNGHVAAVKLGDGSLVEADTVIIGIGAKPAVTPFERVGLNTEVGGIQVDGQFRTSTPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFYSRIFEYEGSPRKVWWQFFGDNVGETVEIGNFDPKISTFWIESGKLKGVLLESGSPEEFQLLPKLARSQPLIDKAKLQNATSVEEALEIARESLQGEAAV*






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