Glyma.08g016500

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Report for Sequence Feature Glyma.08g016500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1311496
stop:	1313676
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g016500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41380.1	AT	CCT motif family protein	JGI	N/A	IEA
GO:0009416	GO-bp	response to light stimulus	EnsemblGenomes	N/A	IEA
GO:0009909	GO-bp	regulation of flower development	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
PF06203	PFAM	CCT motif	JGI	N/A	IEA

Expression Patterns of Glyma.08g016500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g016500 not represented in the dataset	Glyma.08g016500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g016500

Paralog	Evidence	Comments
Glyma.05g209800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g016500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g01980	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g016500

Limit To All Plant Sequences

>Glyma.08g016500.2 sequence-type=transcript locus=Glyma.08g016500 ID=Glyma.08g016500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAAGAGAGAAACTTTGTCAGTGTTGTTCAATGCCTTCTATTTGATCGTTCAAAGCTCGAATTGTACTCTCAGaaaacaaaacaaatacataagacaaaacagcatccgtcaccaaccaaaagaaaaaaaaaATACTGAGTTGTTTCAATAACCATTTTCTGTGTGCTGATTAATTTCAGAGGTTGAATTGATCTCTTAGGAAATTTGTCTCTCTATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGATTGAAGAGTTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGGAGCAGAACAGTACTTGAGAAATTATGGAGCTAGCCAGTTTCAATACGGTGGCTTTTGAGTTTTTGAGCACTGAATTGAAGTAGCCTATTTTTATGAAAGAAGCCTTTAGGAAAGTTCAGGCTCATTGCAGTGATCAAGGAAGTAATTTTAGTTGCAGATGACTTTTTTTTCTTCATTTTTTATGTTTAATAAAATAAAATATATCGATAAGTCCGTGTACGTGGAATCTGAGATGTTCCGGAGGACAAACATGAAATTGGGTTGTTAGGCAAGGGTGCCCTAGTTAGATTAGTTGTTGTAGTTGCACACTTGCACCCCTATATATATATATATTATT

>Glyma.08g016500.3 sequence-type=transcript locus=Glyma.08g016500 ID=Glyma.08g016500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAAGAGAGAAACTTTGTCAGTGTTGTTCAATGCCTTCTATTTGATCGTTCAAAGCTCGAATTGTACTCTCAGaaaacaaaacaaatacataagacaaaacagcatccgtcaccaaccaaaagaaaaaaaaaATACTGAGTTGTTTCAATAACCATTTTCTGTGTGCTGATTAATTTCAGAGGTTGAATTGATCTCTTAGGAAATTTGTCTCTCTATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAAACACTAGCAGATAATCGACCACGCATTCGTGGCAGATTTGCCCGCAACGACGAGTCCAGCGAGACTCTCAAGGTTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGTGACAATAGGGAGCACATTGTTGATTACGTAGTTGAAGGGGTGTTGATATAATTCTGTGTTCATCGTGTAGATTGAAGAGTTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGGAGCAGAACAGTACTTGAGAAATTATGGAGCTAGCCAGTTTCAATACGGTGGCTTTTGAGTTTTTGAGCACTGAATTGAAGTAGCCTATTTTTATGAAAGAAGCCTTTAGGAAAGTTCAGGCTCATTGCAGTGATCAAGGAAGTAATTTTAGTTGCAGATGACTTTTTTTTCTTCATTTTTTATGTTTAATAAAATAAAATATATCGATAAGTCCGTGTACGTGGAATCTGAGATGTTCCGGAGGACAAACATGAAATTGGGTTGTTAGGCAAGGGTGCCCTAGTTAGATTAGTTGTTGTAGTTGCACACTTGCACCCCTATATATATATATATTATT

>Glyma.08g016500.4 sequence-type=transcript locus=Glyma.08g016500 ID=Glyma.08g016500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAAGAGAGAAACTTTGTCAGTGTTGTTCAATGCCTTCTATTTGATCGTTCAAAGCTCGAATTGTACTCTCAGaaaacaaaacaaatacataagacaaaacagcatccgtcaccaaccaaaagaaaaaaaaaATACTGAGTTGTTTCAATAACCATTTTCTGTGTGCTGATTAATTTCAGAGGTTGAATTGATCTCTTAGGAAATTTGTCTCTCTATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAAACACTAGCAGATAATCGACCACGCATTCGTGGCAGATTTGCCCGCAACGACGAGTCCAGCGAGACTCTCAAGGTTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGGTAAATATCACTAGTAACTTTGTTGTTTTCTCGATTTTAATTAGCAAAAATGAATTAAAGCTGGTAAAATAACAAGATAAAAAATATGCATTTTTTTAAAAAAATTATCATCTAATTTCTCTAAAAGTTTGCATACATAATTTAATTTTAATGTATATG

Coding sequences of Glyma.08g016500

Limit To All Plant Sequences

>Glyma.08g016500.1 sequence-type=CDS polypeptide=Glyma.08g016500.1.p locus=Glyma.08g016500 ID=Glyma.08g016500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAAACACTAGCAGATAATCGACCACGCATTCGTGGCAGATTTGCCCGCAACGACGAGTCCAGCGAGACTCTCAAGGTTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGATTGAAGAGTTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGGAGCAGAACAGTACTTGAGAAATTATGGAGCTAGCCAGTTTCAATACGGTGGCTTTTGA

>Glyma.08g016500.2 sequence-type=CDS polypeptide=Glyma.08g016500.2.p locus=Glyma.08g016500 ID=Glyma.08g016500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGATTGAAGAGTTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGGAGCAGAACAGTACTTGAGAAATTATGGAGCTAGCCAGTTTCAATACGGTGGCTTTTGA

>Glyma.08g016500.3 sequence-type=CDS polypeptide=Glyma.08g016500.3.p locus=Glyma.08g016500 ID=Glyma.08g016500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAAACACTAGCAGATAATCGACCACGCATTCGTGGCAGATTTGCCCGCAACGACGAGTCCAGCGAGACTCTCAAGGTTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGTGA

>Glyma.08g016500.4 sequence-type=CDS polypeptide=Glyma.08g016500.4.p locus=Glyma.08g016500 ID=Glyma.08g016500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTGATCTCTATGCTTTTGACACTACCTTATACTCACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTAGAGACCTTCCTTTAATCTCAGAATCTTTTCCTTTCTTTGCCAATTCTCAAGAGAATTGCAATAATAATGCTCTTTCTAACGCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTTAGTCTTTATCATGCTAACCGCTTGCAGTCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGGAGTTTCTCAGCTTTTGATGGGTCAGAAATGAAAACTGAGGAATGCCAAATGGGTGGTGATTATGCATACAGTCAGCAACTCCTTCCTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCATACGAAGGGAAACCAGCTTACAGTGACCCTCGCGAGGATTCTCCAAAATTTCAAAGGCATGAGATGAGTTCCCCTGAAGACAACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGCGATTTGCAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAAACACTAGCAGATAATCGACCACGCATTCGTGGCAGATTTGCCCGCAACGACGAGTCCAGCGAGACTCTCAAGGTTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGGTAAATATCACTAGTAACTTTGTTGTTTTCTCGATTTTAATTAGCAAAAATGAATTAAAGCTGGTAAAATAA

Predicted protein sequences of Glyma.08g016500

Limit To All Plant Sequences

>Glyma.08g016500.1.p sequence-type=predicted peptide transcript=Glyma.08g016500.1 locus=Glyma.08g016500 ID=Glyma.08g016500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSDLYAFDTTLYSHSNSDLVSSDGVRDLPLISESFPFFANSQENCNNNALSNALDPFSPSFFSFSPPSSHLESLSLYHANRLQSLSNGQNLANEFGSFSAFDGSEMKTEECQMGGDYAYSQQLLPHSYSGAENFSKYMQRSFSSNSYEGKPAYSDPREDSPKFQRHEMSSPEDNTVFGGQMRRVCSTGDLQESNFKVGRYSAEERKERISKYRAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDESSETLKVSCSTRDEDDVDFWIEELRLHEEQDDVTVGAEQYLRNYGASQFQYGGF*

>Glyma.08g016500.2.p sequence-type=predicted peptide transcript=Glyma.08g016500.2 locus=Glyma.08g016500 ID=Glyma.08g016500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSDLYAFDTTLYSHSNSDLVSSDGVRDLPLISESFPFFANSQENCNNNALSNALDPFSPSFFSFSPPSSHLESLSLYHANRLQSLSNGQNLANEFGSFSAFDGSEMKTEECQMGGDYAYSQQLLPHSYSGAENFSKYMQRSFSSNSYEGKPAYSDPREDSPKFQRHEMSSPEDNTVFGGQMRRVCSTGDLQESNFKVGRYSAEERKERISKYRAKRNQRNFNKTIKIEELRLHEEQDDVTVGAEQYLRNYGASQFQYGGF*

>Glyma.08g016500.3.p sequence-type=predicted peptide transcript=Glyma.08g016500.3 locus=Glyma.08g016500 ID=Glyma.08g016500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSDLYAFDTTLYSHSNSDLVSSDGVRDLPLISESFPFFANSQENCNNNALSNALDPFSPSFFSFSPPSSHLESLSLYHANRLQSLSNGQNLANEFGSFSAFDGSEMKTEECQMGGDYAYSQQLLPHSYSGAENFSKYMQRSFSSNSYEGKPAYSDPREDSPKFQRHEMSSPEDNTVFGGQMRRVCSTGDLQESNFKVGRYSAEERKERISKYRAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDESSETLKVSCSTRDEDDVDFW*

>Glyma.08g016500.4.p sequence-type=predicted peptide transcript=Glyma.08g016500.4 locus=Glyma.08g016500 ID=Glyma.08g016500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSDLYAFDTTLYSHSNSDLVSSDGVRDLPLISESFPFFANSQENCNNNALSNALDPFSPSFFSFSPPSSHLESLSLYHANRLQSLSNGQNLANEFGSFSAFDGSEMKTEECQMGGDYAYSQQLLPHSYSGAENFSKYMQRSFSSNSYEGKPAYSDPREDSPKFQRHEMSSPEDNTVFGGQMRRVCSTGDLQESNFKVGRYSAEERKERISKYRAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDESSETLKVSCSTRDEDDVDFWVNITSNFVVFSILISKNELKLVK*

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