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Report for Sequence Feature Glyma.08g013500

Feature Type:gene_model
Chromosome:Gm08
Start:1055229
stop:1057422
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g013500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11640.1AT serine racemase JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
KOG1251 KOG Serine racemase JGI N/AIEA
PTHR10314Panther SER/THR DEHYDRATASE, TRP SYNTHASE JGI N/AIEA
PTHR10314:SF36Panther SERINE RACEMASE JGI N/AIEA
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI N/AIEA
PWY0-1535SoyCyc9 D-serine degradation Plant Metabolic Network ISS
GN7V-64301SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.08g013500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g013500
ParalogEvidenceComments
Glyma.05g206600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g013500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g01670 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g013500
>Glyma.08g013500.1 sequence-type=CDS polypeptide=Glyma.08g013500.1.p locus=Glyma.08g013500 ID=Glyma.08g013500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGAGAGCCAAATAACAAAAGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATCAAATCATTGCTCTCTGACTGCTGTCAGGAAGGCAGCTCTACTTCAAATGTGAATGTTTACAAAAGGGAAGAAAAGATGATGACACACTTCCTTGTGCATCCTATGGCCATCAGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTCTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCTGCAGCATTGGCTTTGGCTGCAAAACTACAGGGGATCCCTTCGTATATTGTTATCCCAAAAAATGTGCCAACTTGCAAAATTGAAAATGTAAAGTGGTATGGTGGTCAGTTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAGTTGCCAACAAAGTGTGGCCAGAAACCGGTGCTATCTTTATACATCCATATAATGATGGACGCAAATTAAGTGGCCAGGGTACCATATCCTTAGAGATTCTGGAACAAGCACCACAAATAGATATGCTAGTGGTACTCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCCGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAATACTATAGCTGATGGGCTTCGAGTATTTCTTGGAGATTTGACATGGCCTGTTGTACAAGATCTTGTTGAGGACATTATAACTGTTGAAGACGGTGAAATAATAAAAGCCATGAAACTGTTTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTTTTCTATCCGATACTTTCCAGAAAAATCCTGCTTGGAAGGATTGTAACCATATAGGAATTGTAATTTCAGGAGGCAATGTTGATCTGGCCTTGCTTTGGGATTCTTTGAACAAAGGAAAGTGA
Predicted protein sequences of Glyma.08g013500
>Glyma.08g013500.1.p sequence-type=predicted peptide transcript=Glyma.08g013500.1 locus=Glyma.08g013500 ID=Glyma.08g013500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEESQITKGKYAADISSIKEAHARIKSLLSDCCQEGSSTSNVNVYKREEKMMTHFLVHPMAISGAFKFRGACNAVFSLNDEDASKGVVTHSSGNHAAALALAAKLQGIPSYIVIPKNVPTCKIENVKWYGGQFVWSEASVQSREEVANKVWPETGAIFIHPYNDGRKLSGQGTISLEILEQAPQIDMLVVLISGGGLISGIALAAKSINPAIRIFAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRVFLGDLTWPVVQDLVEDIITVEDGEIIKAMKLFFEILKVVVEPSGAIGLAAFLSDTFQKNPAWKDCNHIGIVISGGNVDLALLWDSLNKGK*






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