Glyma.08g005600

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Report for Sequence Feature Glyma.08g005600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	449745
stop:	453876
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g005600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09570.1	AT	calcium-dependent protein kinase 4	JGI	N/A	IEA
GO:0006468	GO-bp	protein phosphorylation	EnsemblGenomes	N/A	IEA
GO:0006468	GO-bp	protein phosphorylation	JGI	N/A	IEA
GO:0009103	GO-bp	lipopolysaccharide biosynthetic process	JGI	N/A	IEA
GO:0009738	GO-bp	abscisic acid-activated signaling pathway	EnsemblGenomes	N/A	IEA
GO:0016310	GO-bp	phosphorylation	EnsemblGenomes	N/A	IEA
GO:0018105	GO-bp	peptidyl-serine phosphorylation	EnsemblGenomes	N/A	IEA
GO:0035556	GO-bp	intracellular signal transduction	EnsemblGenomes	N/A	IEA
GO:0046777	GO-bp	protein autophosphorylation	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0004672	GO-mf	protein kinase activity	EnsemblGenomes	N/A	IEA
GO:0004672	GO-mf	protein kinase activity	JGI	N/A	IEA
GO:0004674	GO-mf	protein serine/threonine kinase activity	EnsemblGenomes	N/A	IEA
GO:0004683	GO-mf	calmodulin-dependent protein kinase activity	EnsemblGenomes	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	EnsemblGenomes	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	JGI	N/A	IEA
GO:0005516	GO-mf	calmodulin binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0009931	GO-mf	calcium-dependent protein serine/threonine kinase activity	EnsemblGenomes	N/A	IEA
GO:0016301	GO-mf	kinase activity	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0016773	GO-mf	phosphotransferase activity, alcohol group as acceptor	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0032	KOG	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily	JGI	N/A	IEA
PTHR24349	Panther	SERINE/THREONINE-PROTEIN KINASE	JGI	N/A	IEA
PTHR24349:SF13	Panther		JGI	N/A	IEA
PF00036	PFAM	EF hand	JGI	N/A	IEA
PF00069	PFAM	Protein kinase domain	JGI	N/A	IEA

Proteins Associated with Glyma.08g005600

Locus	Gene Symbol	Protein Name
	CDPK	Calcium-dependent protein kinase SK5

Expression Patterns of Glyma.08g005600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g005600

Paralog	Evidence	Comments
Glyma.05g198300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g005600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g00840	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.08g005600

Limit To All Plant Sequences

>Glyma.08g005600.1 sequence-type=CDS polypeptide=Glyma.08g005600.1.p locus=Glyma.08g005600 ID=Glyma.08g005600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGAAATCTAGTTCGAGTTCGACAACAACAAACGTGGTGACTCTGAAGGCGGCGTGGGTTCTCCCGCAGCGCACGCAGAACATCCGTGAGGTGTACGAGGTTGGGCGGAAGCTCGGGCAGGGCCAATTCGGGACCACCTTCGAGTGCACGCGCCGTGCGAGTGGTGGGAAGTTCGCGTGCAAGTCGATTCCGAAGCGGAAGCTGCTGTGCAAGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCGGAACACGCCAACGTTGTCCGCATCGAAGGGACGTACGAGGATTCCACGGCCGTGCACCTGGTCATGGAGTTGTGCGAGGGTGGAGAGTTGTTTGACAGGATCGTGCAGAAGGGACACTACAGCGAGAGACAGGCGGCGAGGTTGATAAAGACGATTGTTGAGGTTGTTGAGGCGTGTCACTCGCTAGGGGTCATGCATAGGGACCTTAAGCCTGAGAATTTCTTGTTTGATACCATTGATGAGGATGCTAAGCTTAAGGCCACCGATTTCGGCTTGTCTGTTTTTTACAAGCCTGGTGAATCCTTTTGTGATGTTGTCGGGAGCCCATACTATGTCGCACCAGAGGTCTTGCGCAAGCTCTATGGACCTGAATCAGATGTTTGGAGTGCAGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAATCTGAACCGGGGATCTTCCGACAGATTTTACTAGGAAAACTTGATTTTCATTCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTCTTGATTCTGCAGTTTTATCACGTCTGAAACAATTCTCTGCCATGAATAAATTGAAAAAGATGGCATTGCGTGTTATTGCTGAGAGGCTATCTGAAGAAGAAATTGGTGGACTGAAAGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACCATAACGTTTGATGAGTTAAAAGATGGTTTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAAAAGTGGGACAATTGATTATGGTGAATTCATTGCTGCCACTGTCCATTTAAATAAGCTGGAGAGAGAGGAAAACCTAGTGTCGGCCTTCTCCTATTTTGACAAAGATGGCAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGATGATATCCATATTGACGACATGATCAAGGAAATTGATCAAGATAACGATGGGCAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAAGGCAATGGAGGAATTGGGAGGCGAACTATGAGAAAAACACTAAATTTAAGAGATGCTCTTGGATTAGTAGACAATGGGTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA

Predicted protein sequences of Glyma.08g005600

Limit To All Plant Sequences

>Glyma.08g005600.1.p sequence-type=predicted peptide transcript=Glyma.08g005600.1 locus=Glyma.08g005600 ID=Glyma.08g005600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAKSSSSSTTTNVVTLKAAWVLPQRTQNIREVYEVGRKLGQGQFGTTFECTRRASGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGTYEDSTAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTIDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAESEPGIFRQILLGKLDFHSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK*

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