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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08740.1 | AT | NAD(P)H dehydrogenase C1 | JGI | N/A | IEA |
| GO:0019646 | GO-bp | aerobic electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0042372 | GO-bp | phylloquinone biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0003955 | GO-mf | NAD(P)H dehydrogenase (quinone) activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| PTHR22915 | Panther | NADH DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR22915:SF15 | Panther | JGI | N/A | IEA | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | N/A | IEA |
| GN7V-66880 | SoyCyc9-rxn | NADH:ubiquinone reductase (non-electrogenic) | Plant Metabolic Network | ISS |
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Glyma.08g003000 not represented in the dataset |
Glyma.08g003000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g195400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g00520 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g003000.1 sequence-type=CDS polypeptide=Glyma.08g003000.1.p locus=Glyma.08g003000 ID=Glyma.08g003000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGCACATTGCTTTAGCTGCACCGGTCTCTCCTACCGTCGTCGATTTTCATTCATCATCTCATCCACACACAACTACTTGTTTGGAATCTGAGAAAACCGAGGGAAAATTATCCATTCTCTTTGTGGTTTCAGGCGGAGCGAAGCAATGGAGCGCGCTATTTCCGAGTTTTCGGAGGAGCAGGGGAGCCGGTTCCTCCTTGTTCGCAAGCTCTCTCAGGAAACGATTGCAATTGCGGTTTTTCGCTTCGGGAGAAAATGGCGGCACTGGAGGTGCTGTGGAGGAGATATCCGAAGCCGAAAAGGAGCCTACGAATTTCGCGTGGCCTGATAACAAGAATTATCTGATTGCAGAACCCAGGGTGTGCATATTAGGTGGTGGATTTGGTGGCTTATATACTGCTTTAAGGTTGGAATCATTGGAGTGGCCTGATGATAAAAAAACACAGATTGTTCTTGTTGACCAGTCTGAATGTTTTGTTTTCAAGCCAATGTTGTATGAGCTTCTATCCGGAGAAGTGGACAAATGGGAAATAGCTCCTCCTTTCTCAGATTTGCTGGCAAATACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGAATCCCTCTGATCATTGGGGAATGAATGGATCCAAAGCATCTAGTTGTGGAGGAACTGTTCATCTTGAAAGTGGCCTTCTTGTTGAATATGACTGGCTGGTTCTTGCGTTGGGAGCTGAATCTAAACTGGATGTTGTACCAGGGGCAGTAGAATTTGCAATTCCTTTCTCAATGCTAGAAGATGCACCTAAAGTCAATGATAAATTAACAAAATTAGAGAGAAAGACCTTTGGTAAGGACTTTCAAATTAGTGTGGCTGTTATTGGTTGTGGAATTGTGAGAGCTATTAATGTTGAAACAATGATTTGCCCAAATGCCCAACCTGGCAATAGGGAAGTTGCACTAAAAGTTCTTTCATCAAGAAAAGTCGAACTTTTATTGGGTTATTTTGTCTGCTGTATTCAGAGGCTCAGTGAATTAGAGTCTTCAGATACCCTGACAGGGGCAGATGAAAATAGTACTGAAGTAGTGCCTGATTTTGAGAAATATATATTGGAGCTACAACCTGCTGAAAGGGGAATGCAAAGTAAAATCGTTGAAGCAGATCTGGTATTGTGGACTGCTGGAACCAAGCCTCCTCTTCCTCAGCTGGAACCTTCAGATGTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATTTGTGGGCTGCGATCAATGGGCGTCCACTTTTACCATTTAGGTTTCAGAATCTAGGTGAGATGATGACCTTGGGAAGAAATGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCCTAGAAGGTTCTGTTGGTCATACTGCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAGTCTGCTATTGATTCTGTGTCATCGCTACAAAGTACCTTGTACAAGGTGGTTTCGGGCTCTTAG
>Glyma.08g003000.1.p sequence-type=predicted peptide transcript=Glyma.08g003000.1 locus=Glyma.08g003000 ID=Glyma.08g003000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLHIALAAPVSPTVVDFHSSSHPHTTTCLESEKTEGKLSILFVVSGGAKQWSALFPSFRRSRGAGSSLFASSLRKRLQLRFFASGENGGTGGAVEEISEAEKEPTNFAWPDNKNYLIAEPRVCILGGGFGGLYTALRLESLEWPDDKKTQIVLVDQSECFVFKPMLYELLSGEVDKWEIAPPFSDLLANTSVQFFKDRVKVLNPSDHWGMNGSKASSCGGTVHLESGLLVEYDWLVLALGAESKLDVVPGAVEFAIPFSMLEDAPKVNDKLTKLERKTFGKDFQISVAVIGCGIVRAINVETMICPNAQPGNREVALKVLSSRKVELLLGYFVCCIQRLSELESSDTLTGADENSTEVVPDFEKYILELQPAERGMQSKIVEADLVLWTAGTKPPLPQLEPSDVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAISPSFIDGLTLEGSVGHTARKIAYLIRLPTDEHRLKVGISWLTKSAIDSVSSLQSTLYKVVSGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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