SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g002900

Feature Type:gene_model
Chromosome:Gm08
Start:211294
stop:221624
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g002900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63610.1AT cyclin-dependent kinase E;1 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0007346GO-bp regulation of mitotic cell cycle EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004693GO-mf cyclin-dependent protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0666 KOG Cyclin C-dependent kinase CDK8 JGI N/AIEA
PTHR24056Panther CELL DIVISION PROTEIN KINASE JGI N/AIEA
PTHR24056:SF83Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Proteins Associated with Glyma.08g002900
LocusGene SymbolProtein Name
Cdk8-4 Cyclin-dependent kinase 8 gene 4

Expression Patterns of Glyma.08g002900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g002900
ParalogEvidenceComments
Glyma.05g195300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g002900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g00510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g002900
>Glyma.08g002900.1 sequence-type=CDS polypeptide=Glyma.08g002900.1.p locus=Glyma.08g002900 ID=Glyma.08g002900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGACGGAAGTGGGAACCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCTTAGGCAAAATCGGAGAAGGCACTTACGGCCTCGTCTTCCTGGCCCGAACCAAAGGCACTCCCTCCAAATCCATCGCCATCAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGCTGCTCAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTCAATGTCCACATCAACCACGCCGACATGTCGCTCTACCTCGCCTTTGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGATAAACTCAACCATTCCATTAACCAATACACTGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGAGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTCTGAAGCCGTTATCTGATAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCCGAGTTGCTTCTTGGAGCAAAACATTATACTAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCGCTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTCGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGATAATGCTGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAGCCCCGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGTAAGCGTTTAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGGAATGCACTTGTACCCTGCCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCAGTGGACACCACTACTGATCTTGAAGGAACAACCAATCTGCCACCTTCACAAACGGTAAATGCAGTTTCTGGCAGCATGCCTGGTCCTCATGGGTCAAATAGATCTGTTCCTCGGCCAGTGAATGTTGTTGGAATGCAAAGAATGCCCCCTCAAGCAATGGCAGCTTATAATCTCTCATCTCAGGCAGCCATGGGAGACGGAATGAATCCTGGGGGTATCTCAAAGCAACGAGGTGTTCCACAGGCCCATCAGCCGCAACAGTTGAGAAGGAAGGAGCAAATGGGGATGCCGGGATACCCTGCACAACAGAAGTCAAGACGAATATAA
Predicted protein sequences of Glyma.08g002900
>Glyma.08g002900.1.p sequence-type=predicted peptide transcript=Glyma.08g002900.1 locus=Glyma.08g002900 ID=Glyma.08g002900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDGSGNRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKGTPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRLTAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTTTDLEGTTNLPPSQTVNAVSGSMPGPHGSNRSVPRPVNVVGMQRMPPQAMAAYNLSSQAAMGDGMNPGGISKQRGVPQAHQPQQLRRKEQMGMPGYPAQQKSRRI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo