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Report for Sequence Feature Glyma.08G124000

Feature Type:gene_model
Chromosome:Gm08
Start:9519411
stop:9525223
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08G124000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21160.1AT Calcium-dependent ARF-type GTPase activating protein family JGI N/AIEA
GO:0043547GO-bp positive regulation of GTPase activity EnsemblGenomesN/AIEA
GO:0005096GO-mf GTPase activator activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1030 KOG Predicted Ca2+-dependent phospholipid-binding protein JGI N/AIEA
PTHR23180Panther CENTAURIN/ARF JGI N/AIEA
PTHR23180:SF24Panther JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF01412PFAM Putative GTPase activating protein for Arf JGI N/AIEA

Proteins Associated with Glyma.08G124000
LocusGene SymbolProtein Name
C2-80 C2 domain containing protein gene 80

Expression Patterns of Glyma.08G124000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08G124000
ParalogEvidenceComments
Glyma.05g165900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08G124000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g124000 Wm82.a4.v1ISS As supplied by JGI
Glyma08g13070 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08G124000
>Glyma.08g124000.2 sequence-type=transcript locus=Glyma.08g124000 ID=Glyma.08g124000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGGGATTTCAAACTCGACTCGTGCAATTCATTCATTCACCCGTAGTTTAGCTTGGCTGCTATTACTGGAGTTGCAGTTTTGAACGATAGCTGGCTTCAAGGGTGGCAATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAGAATTAAATGAAGCATTCTTGGATTGAATGGGGAAACAGTAATTCCAAATCAATAACTGCACGGCACGTCAGAAAAAAAAAAAAAAACACTGCATGAAATTTTGGGACGGCAGCATCTCATATGTTGCTGAGCTATATTCTAGATATGAAAGCATATATTCCTTAAGTTTTGCACCAAATTGGGGTGGCATGTTGTGAAGAGCACTAAACGAATTTACGGTAGAAGATATAGTTGCAAGTTGCAAGTTGCAATGTCTTTAATAAAATATGTTTGGAGATTGAGTGGACAGTAAGATTTTTTTGGTGGTAGCAAGATGATACAAGTCAAGAAAGATTTGAAGAGTATTACTTTAAACTTTCATTCAAATCGTTGCAAAATTGATGATCTTAGGTTTCA

>Glyma.08g124000.3 sequence-type=transcript locus=Glyma.08g124000 ID=Glyma.08g124000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGGACTCAAAGTTTATGTTTGAAAAACAGGCTTATTCTGTTTAAGGCAAATCTGGTGTTGCTTATTTCCATCTCTAATTGTGAATGTAAATTTATTTTTGCATATTTTTCTTGAGAAGTTGAATGATTGGCAGGTTTCTTACAGGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAGAATTAAATGAAGCATTCTTGGATTGAATGGGGAAACAGTAATTCCAAATCAATAACTGCACGGCACGTCAGAAAAAAAAAAAAAAACACTGCATGAAATTTTGGGACGGCAGCATCTCATATGTTGCTGAGCTATATTCTAGATATGAAAGCATATATTCCTTAAGTTTTGCACCAAATTGGGGTGGCATGTTGTGAAGAGCACTAAACGAATTTACGGTAGAAGATATAGTTGCAAGTTGCAAGTTGCAATGTCTTTAATAAAATATGTTTGGAGATTGAGTGGACAGTAAGATTTTTTTGGTGGTAGCAAGATGATACAAGTCAAGAAAGATTTGAAGAGTATTACTTTAAACTTTCATTCAAATCGTTGCAAAATTGATGATCTTAGGTTTCA
Coding sequences of Glyma.08G124000
>Glyma.08g124000.1 sequence-type=CDS polypeptide=Glyma.08g124000.1.p locus=Glyma.08g124000 ID=Glyma.08g124000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG

>Glyma.08g124000.2 sequence-type=CDS polypeptide=Glyma.08g124000.2.p locus=Glyma.08g124000 ID=Glyma.08g124000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG

>Glyma.08g124000.3 sequence-type=CDS polypeptide=Glyma.08g124000.3.p locus=Glyma.08g124000 ID=Glyma.08g124000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTGGCAGGTTTCTTACAGGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG
Predicted protein sequences of Glyma.08G124000
>Glyma.08g124000.1.p sequence-type=predicted peptide transcript=Glyma.08g124000.1 locus=Glyma.08g124000 ID=Glyma.08g124000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNNQRLEFGRPVSSKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY*

>Glyma.08g124000.2.p sequence-type=predicted peptide transcript=Glyma.08g124000.2 locus=Glyma.08g124000 ID=Glyma.08g124000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNNQRLEFGRPVSSKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY*

>Glyma.08g124000.3.p sequence-type=predicted peptide transcript=Glyma.08g124000.3 locus=Glyma.08g124000 ID=Glyma.08g124000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIGRFLTGKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY*






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