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Report for Sequence Feature Glyma.08G036400

Feature Type:gene_model
Chromosome:Gm08
Start:2868342
stop:2871366
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08G036400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29080.1AT phytochrome-associated protein 2 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PF02309PFAM AUX/IAA family JGI N/AIEA

Proteins Associated with Glyma.08G036400
LocusGene SymbolProtein Name
IAA24 Indole-3-Acetic Acid Responsive Gene 24

Expression Patterns of Glyma.08G036400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08G036400
ParalogEvidenceComments
Glyma.05g229300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08G036400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g036400 Wm82.a4.v1ISS As supplied by JGI
Glyma08g04070 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08G036400
>Glyma.08g036400.2 sequence-type=transcript locus=Glyma.08g036400 ID=Glyma.08g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTTTTTTTAGCTCCCTTAAATGTAATTGGCCAACACTACATAACAGAGCAAAGAGAAAAGCTTCCTTCAATGTAGTTGTGATTCTTCAATACCATATATTCTCTTTCTCTTTCTTGATTTGTGTTGTGAAACAGTTAAAAGTGGTCTTGATGTCTGAGGCATTGGAAGAGGTTGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAAACTGGAATGGTGGAGGATCTGAAAAAGATGCCGCTGCCTTGTTTTCTCCAACTTCAAGGGGTGCTGTTAGTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAAACCATTACATGAGAATAAGCCCCAGATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGCTGCTGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCATATGGGGTTTCTAGTCGGGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGGTAGGTCCAACATTCGTTTTAATTAATCTGTTATACTCTGCTTTCGTTCATTCATATATAGATGTAGAATTGAGAAAACAGGAAAGTCATCATTCAAACTGGAAAACAGAATCCTGGTTTGACAAACACAATTGTACTCAATTGTTAATGCTTTGATTTTAGTTTCATGTTTCTTTAATTTTACGATTTTTTTTAGGGCAAGTTATGTATATATATATAACATTAAATTG
Coding sequences of Glyma.08G036400
>Glyma.08g036400.1 sequence-type=CDS polypeptide=Glyma.08g036400.1.p locus=Glyma.08g036400 ID=Glyma.08g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGCACTTCCCTGTCTTCTTTTTTTTTTATATATAATTTTTTTTAGCTCCCTTAAATGTAATTGGCCAACACTACATAACAGAGCAAAGAGAAAAGCTTCCTTCAATGTAGTTGTGATTCTTCAATACCATATATTCTCTTTCTCTTTCTTGATTTGTGTTGTGAAACAGTTAAAAGTGGTCTTGATGTCTGAGGCATTGGAAGAGGTTGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAAACTGGAATGGTGGAGGATCTGAAAAAGATGCCGCTGCCTTGTTTTCTCCAACTTCAAGGGGTGCTGTTAGTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAAACCATTACATGAGAATAAGCCCCAGATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGCTGCTGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCATATGGGGTTTCTAGTCGGGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCTACTAG

>Glyma.08g036400.2 sequence-type=CDS polypeptide=Glyma.08g036400.2.p locus=Glyma.08g036400 ID=Glyma.08g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGAGGCATTGGAAGAGGTTGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAAACTGGAATGGTGGAGGATCTGAAAAAGATGCCGCTGCCTTGTTTTCTCCAACTTCAAGGGGTGCTGTTAGTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAAACCATTACATGAGAATAAGCCCCAGATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGCTGCTGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCATATGGGGTTTCTAGTCGGGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGGTAGGTCCAACATTCGTTTTAATTAA
Predicted protein sequences of Glyma.08G036400
>Glyma.08g036400.1.p sequence-type=predicted peptide transcript=Glyma.08g036400.1 locus=Glyma.08g036400 ID=Glyma.08g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLALPCLLFFLYIIFFSSLKCNWPTLHNRAKRKASFNVVVILQYHIFSFSFLICVVKQLKVVLMSEALEEVVPSMKGGCEEEGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGNWNGGGSEKDAAALFSPTSRGAVSVSVSAAKSLTLTATDCTNQPTALGASVLKETVPHSPKPLHENKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDAAADAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRY*

>Glyma.08g036400.2.p sequence-type=predicted peptide transcript=Glyma.08g036400.2 locus=Glyma.08g036400 ID=Glyma.08g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEALEEVVPSMKGGCEEEGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGNWNGGGSEKDAAALFSPTSRGAVSVSVSAAKSLTLTATDCTNQPTALGASVLKETVPHSPKPLHENKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDAAADAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLGRSNIRFN*






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