SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08G007500

Feature Type:gene_model
Chromosome:Gm08
Start:564523
stop:572593
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08G007500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61910.4AT DCD (Development and Cell Death) domain protein JGI N/AIEA
GO:0060548GO-bp negative regulation of cell death EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005544GO-mf calcium-dependent phospholipid binding EnsemblGenomesN/AIEA
KOG1327 KOG Copine JGI N/AIEA
PTHR10857Panther COPINE JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF07002PFAM Copine JGI N/AIEA

Proteins Associated with Glyma.08G007500
LocusGene SymbolProtein Name
C2-76 C2 domain containing protein gene 76

Expression Patterns of Glyma.08G007500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08G007500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g007500 Wm82.a4.v1ISS As supplied by JGI
Glyma08g01020 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08G007500
>Glyma.08g007500.2 sequence-type=transcript locus=Glyma.08g007500 ID=Glyma.08g007500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGATATTCCGGGTCTGGTTTTCTTTTCTCGATATTCAAATCAATTTCCGACTTTGGAGTCTTTGAGGTCAGGTCACACCTACTACCCGTTTACTTCACCCAGTCAGTCAGTCTATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTAGGTATTAGTTTGCAAATTATAACTTTGTCAAATGACTT
Coding sequences of Glyma.08G007500
>Glyma.08g007500.1 sequence-type=CDS polypeptide=Glyma.08g007500.1.p locus=Glyma.08g007500 ID=Glyma.08g007500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTTTAGCTGAATTACCTACTCAATTTTTAAGTTACATGCGGAGCAGAAATATCCTACCGAATTCCTAG

>Glyma.08g007500.2 sequence-type=CDS polypeptide=Glyma.08g007500.2.p locus=Glyma.08g007500 ID=Glyma.08g007500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTAGGTATTAG
Predicted protein sequences of Glyma.08G007500
>Glyma.08g007500.1.p sequence-type=predicted peptide transcript=Glyma.08g007500.1 locus=Glyma.08g007500 ID=Glyma.08g007500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNCCSDVAGGQSAIGGTAAGHLNPANAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNAALTELGRTEVILNSLNPTWITKHTLIYNFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAPAGHNSHNKVLKSQLFVDKFSESIQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRSRNILPNS*

>Glyma.08g007500.2.p sequence-type=predicted peptide transcript=Glyma.08g007500.2 locus=Glyma.08g007500 ID=Glyma.08g007500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNCCSDVAGGQSAIGGTAAGHLNPANAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNAALTELGRTEVILNSLNPTWITKHTLIYNFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAPAGHNSHNKVLKSQLFVDKFSESIQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSRY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo