SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49900.1 | AT | Beta-glucosidase, GBA2 type family protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006665 | GO-bp | sphingolipid metabolic process | JGI | N/A | IEA |
| GO:0006680 | GO-bp | glucosylceramide catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004348 | GO-mf | glucosylceramidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004348 | GO-mf | glucosylceramidase activity | JGI | N/A | IEA |
| GO:0004553 | GO-mf | hydrolase activity, hydrolyzing O-glycosyl compounds | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016798 | GO-mf | hydrolase activity, acting on glycosyl bonds | EnsemblGenomes | N/A | IEA |
| KOG2119 | KOG | Predicted bile acid beta-glucosidase | JGI | N/A | IEA |
| PTHR12654 | Panther | BILE ACID BETA-GLUCOSIDASE-RELATED | JGI | N/A | IEA |
| PF04685 | PFAM | Protein of unknown function, DUF608 | JGI | N/A | IEA |
| PF12215 | PFAM | beta-Glucocerebrosidase 2 N terminal | JGI | N/A | IEA |
| GN7V-53674 | SoyCyc9-rxn | glucosylceramidase | Plant Metabolic Network | ISS |
|
Glyma.07g273300 not represented in the dataset |
Glyma.07g273300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g40310 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g273300.1 sequence-type=CDS polypeptide=Glyma.07g273300.1.p locus=Glyma.07g273300 ID=Glyma.07g273300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTAGAAAATGGTTTTGTTCAAGATGATATCACACCACCGCCCAAGTCTTGTAGCAACAAGAAGATGGTTGAACCAGGGAAACCTGCTGGACTTACCTGGCAGCGAAAATTAAACAACAATGGAAATGCTTCATCACAAATCTCCTTATCTTTGAAGGAGATCATTCATCTGGCTCCAATTGGTTATCGGCTATGGCGTCATTGTCGGGAAGAAGCTGCCAAAGGAAGGGGGGGAATGATTGATCCTTTTGCCAAGCGCCACGTAACATTTTGTCATGGTGTTCCTTTGGGAGGAAGCATTGGAAGAAGTTTCAGAGGTGAATTTCAGCGTTGGCAACTATTCCCTGTAATATGTGAAGAGAAACCAGTTTTAGCAAATCAGTTTTCTGTTACCTACAAAAATTCCGACAAGAATCATAACATGAACATGTATGAGTTTGAAATTGTGGGTTGTGGTGAAAAATATTCTAGTGTACTTTGTCCAAGGAAGCCAGTGATAATAAAACAAAATCCAGTGTCAGGGATTGAATCATGGGATTGGAATATAAATGGAAACAGTTCCACATATCATGCATTATACCCAAGGGCTTGGACAGTATATGAGGAACCTGACCCAGCTTTGAGAATAGTTTGTCGGCAGATTTCACCTGTTATACCCCATAATTATAAGGAGAGTAGCTTTCCTGTGACAGTTTTCACTTTCACGCTGAAAAATTTAGGTAACACAACAGCTGATGTTACCTTGCTTTTCACATGGACAAACTCAGTTGGAGGAATTTCTGAATTTACTGGTGACCACTTTAATTCAAAGACAACGACTGCAAATGAGAGATCTCCTGTCACATTTGCAATTGCAGCAGAAGAGACTGAAGATGTTCATATCTCAGAATGCCCTGTCTTTGTTATATCTGGTGCTTACAGCAGTATCTCGGCTAAGAATATGTGGAATGAAGTTAAACAGCACGGGTCATTTGACCATCTGAATTTTGCTGAAACCTCTGCGCCTTCAGAACCAGGATCATCTATTGGAGCAGCTATTGCAGCAACTGTGACTATTCCCTCTAATGCTCAGCGTATTGTGACATTTTCATTAGCATGGGACTGCCCTGAAGTCAAGTTTCCTGAAGGAAAGACATATTACAGGCGTTACACTAAATTCTATGGTACTAATGGTGATGCTGCTGCAGATATTGCACATGATGCTATTATGGAACATTGCCAATGGGAGGCCCAGATTGATGATTGGCAAAGACCAATACTCGAGGACAAGAGAGTTCTGTGCAGGTACCCAACTACCCTTTTGAATGAACTTTACTATTTGAATTCTGGGGGGACAATTTGGACAGATGGTTCACTTCCTGTGCATGGTTTAGTTAACACAGGAGAAAGAAAATTTTCCCTGGATGGATTCAACAATAATTTATCTCATAAAAATGATATTGCTATCAACATTCTTGAAATGTTTAACTCAGTAGTTGAGCAAACGCACTCTCCACCTGCATCGAAGTCTGCATATGGAGTAAATCTGCTCCAAGAAGGGGAAGAAAACATTGGTCAGTTTCTTTATCTTGAAGGCATTGAGTATCAAATGTGGAATACCTATGATGTCCATTTTTACTCTTCTTTTTCACTAGTCATGCTATTTCCAAAACTTGAACTCAGCATCCAAAGGGACTTCGCTGCAGCAGTATTGATGCATGACCCTAGTAAGATGAAACTTCTATATGATGGCCAATGGGCACCAAGAAAGGTTCTTGGTGCTGTTCCTCATGATATTGGGCTCAATGATCCATGGTTTGAAGTAAATGGCTATAATCTTTATAACACAGATAGGTGGAAAGACTTGAATCCAAAATTTGTTCTCCAGATTTATAGGGATGTAGTTGCCACTGGTGACAAGAAGTTTGCACAAGCTGTTTGGCCTGCTGTTTATATTGCAATTGCTTATATGGACCAATTTGACAAGGATGGTGATGGAATGATTGAGAATGAAGGCTTTCCCGATCAAACTTATGACACATGGTCTGTGTCTGGTGTGAGTGCATACAGTGGTGGACTGTGGGTAGCAGCACTTCAGGCAGCATCAGCGCTGGCACGTGAAGTTGGTGACAAGGGTTCTGAGGATTATTTTTGGCTGAAGTTTCAAAAAGCAAAGTCTGTATATGAAAATTTATGGAATGGTTCTTACTTCAATTATGATAGCAGTGGTGGAAGTTCGAGTTTATCCATTCAAGCTGATCAATTAGCAGGCCAATGGTATGCTAGAGCATGTGGTCTTTTGCCAATTGTTGAAGAAAAGAAAAGTAGAAGTGCACTTCAAATTGTTTATAATCACAATGTTATGAAAGTACATAAGGGAGGCGTGGTTGACATGTCAACAATGCAATCTCGGGAAATATGGTCAGGAGTCACATATGCCTTAGCTGCAACAATGATCCAAGAAAATATGATTGACATGGCATTTCAAACTGCTGGTGGAGTTTATGAAACTGCATGGTCCAACAATGGACTCGGCTATTCTTTCCAAACTCCTGAAGCGTGGACCACTAAAGATGAATATAGATCTTTATGTTACATGCGCCCTTTAGCGATATGGGCAATGCAATGGGAATTATCAAGAGCAAAGCACATTCAACATGAGAGTAAATCAGACATGAAAGAAAAAGATATGTTGTCTAGATATCATGATGGTTTTTCGAAAGTTGCTCGCCTTCTAAAGGTGAAGGAGGAGACAGATTCTAGAAGTTTGTTTCAGGTTATATATGATTTTACTTGCAAGAGGATGTGGGTATAG
>Glyma.07g273300.1.p sequence-type=predicted peptide transcript=Glyma.07g273300.1 locus=Glyma.07g273300 ID=Glyma.07g273300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVENGFVQDDITPPPKSCSNKKMVEPGKPAGLTWQRKLNNNGNASSQISLSLKEIIHLAPIGYRLWRHCREEAAKGRGGMIDPFAKRHVTFCHGVPLGGSIGRSFRGEFQRWQLFPVICEEKPVLANQFSVTYKNSDKNHNMNMYEFEIVGCGEKYSSVLCPRKPVIIKQNPVSGIESWDWNINGNSSTYHALYPRAWTVYEEPDPALRIVCRQISPVIPHNYKESSFPVTVFTFTLKNLGNTTADVTLLFTWTNSVGGISEFTGDHFNSKTTTANERSPVTFAIAAEETEDVHISECPVFVISGAYSSISAKNMWNEVKQHGSFDHLNFAETSAPSEPGSSIGAAIAATVTIPSNAQRIVTFSLAWDCPEVKFPEGKTYYRRYTKFYGTNGDAAADIAHDAIMEHCQWEAQIDDWQRPILEDKRVLCRYPTTLLNELYYLNSGGTIWTDGSLPVHGLVNTGERKFSLDGFNNNLSHKNDIAINILEMFNSVVEQTHSPPASKSAYGVNLLQEGEENIGQFLYLEGIEYQMWNTYDVHFYSSFSLVMLFPKLELSIQRDFAAAVLMHDPSKMKLLYDGQWAPRKVLGAVPHDIGLNDPWFEVNGYNLYNTDRWKDLNPKFVLQIYRDVVATGDKKFAQAVWPAVYIAIAYMDQFDKDGDGMIENEGFPDQTYDTWSVSGVSAYSGGLWVAALQAASALAREVGDKGSEDYFWLKFQKAKSVYENLWNGSYFNYDSSGGSSSLSIQADQLAGQWYARACGLLPIVEEKKSRSALQIVYNHNVMKVHKGGVVDMSTMQSREIWSGVTYALAATMIQENMIDMAFQTAGGVYETAWSNNGLGYSFQTPEAWTTKDEYRSLCYMRPLAIWAMQWELSRAKHIQHESKSDMKEKDMLSRYHDGFSKVARLLKVKEETDSRSLFQVIYDFTCKRMWV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
