Glyma.07g272500

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Report for Sequence Feature Glyma.07g272500

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44464751
stop:	44468459
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g272500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02570.1	AT	nucleic acid binding;RNA binding	JGI	N/A	IEA
AT2G02570.3	AT	nucleic acid binding;RNA binding	JGI	N/A	IEA
GO:0006397	GO-bp	mRNA processing	EnsemblGenomes	N/A	IEA
GO:0006397	GO-bp	mRNA processing	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
KOG3026	KOG	Splicing factor SPF30	JGI	N/A	IEA
PTHR12664	Panther	SURVIVAL MOTOR NEURON PROTEIN	JGI	N/A	IEA
PF06003	PFAM	Survival motor neuron protein (SMN)	JGI	N/A	IEA

Expression Patterns of Glyma.07g272500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g272500 not represented in the dataset	Glyma.07g272500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g272500

Paralog	Evidence	Comments
Glyma.17g001900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g272500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g40240	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g272500

Limit To All Plant Sequences

>Glyma.07g272500.2 sequence-type=transcript locus=Glyma.07g272500 ID=Glyma.07g272500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAGCGTAGCGTGTTGAAGAATCAGAATTGGAATCGGAAGAAGAAAGGAGAATTAGGGTTTGTGGAGATGCAAGGGCAAGGCGTTGATGAAGTGAACATTGAAGAGTTGGCCTCGAATCTTTCCCTCTACAAAGATCAACTGAACCAGGTTAGGCAACTCTTGAACGATGACCCTTCAAATTCTGAATATGCTGACATGGAGAGGGAACTTTCCGAGGTCATTGCTTTGACTGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCCCTGCTCCTCCTAACGCTGCTGCTGCCTCTCCAACCTTGTCCATACATAATGACAATCAAGTGCTGGATAGCAGCTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGGTATGATGCAACAGTTGAGGCTTATACACCAAATGGTTATTATGTAAGCTATGACAATTGGGGTAATAAAGAAGAGGTTGATCCTGCCAATATAAGGTCAATTCAAGAAGGTTCTGTTGATGCTTTATTAGAAGCTGAGCGAGTTGCTGAAGCAACAAAACAGGCCATCAAACGAAAAATTGTGCAAGCTGCATCTATCGATTTACAGTCTCGGAGTCTACCTGCAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGCTTCGAAACGCAAGAAAATACATGCCTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAAGAGAGAAAAACATTTTCACCTCAAAGATGGTACTGTTGAAAATGATGAGTAGGTTATGCACCTATTCGGCTAAATGCCCTTTCAATTGTATGTAATGCTCAAACAACCAATCTATGTAGAGGTTCACTGATGGCAAACCAAACGATGTTATCTACTGAAATGTGTTGAGACTGTTCTAGATTATGGTTTTAGCCCCCTATACATATTTTTCTCCCACTAACGACGTTGCACATATATTTGTTAGTTTAaaataaataatataatattatgaaacaaataaataaCTTCTACTTTTAAACTAACAAATATATGTGCAAGGTCCTTAGTATAATTTATATTTATTAATTTTAATATTA

Coding sequences of Glyma.07g272500

Limit To All Plant Sequences

>Glyma.07g272500.1 sequence-type=CDS polypeptide=Glyma.07g272500.1.p locus=Glyma.07g272500 ID=Glyma.07g272500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGGGCAAGGCGTTGATGAAGTGAACATTGAAGAGTTGGCCTCGAATCTTTCCCTCTACAAAGATCAACTGAACCAGGTTAGGCAACTCTTGAACGATGACCCTTCAAATTCTGAATATGCTGACATGGAGAGGGAACTTTCCGAGGTCATTGCTTTGACTGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCCCTGCTCCTCCTAACGCTGCTGCTGCCTCTCCAACCTTGTCCATACATAATGACAATCAAGTGCTGGATAGCAGCTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGGTATGATGCAACAGTTGAGGCTTATACACCAAATGGTTATTATGTAAGCTATGACAATTGGGGTAATAAAGAAGAGGTTGATCCTGCCAATATAAGGTCAATTCAAGAAGGTTCTGTTGATGCTTTATTAGAAGCTGAGCGAGTTGCTGAAGCAACAAAACAGGCCATCAAACGAAAAATTGTGCAAGCTGCATCTATCGATTTACAGTCTCGGAGTCTACCTGCAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGAAAGCTTCGAAACGCAAGAAAATACATGCCTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAAGAGAGAAAAACATTTTCACCTCAAAGATGGTACTGTTGAAAATGATGAGTAG

>Glyma.07g272500.2 sequence-type=CDS polypeptide=Glyma.07g272500.2.p locus=Glyma.07g272500 ID=Glyma.07g272500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGGGCAAGGCGTTGATGAAGTGAACATTGAAGAGTTGGCCTCGAATCTTTCCCTCTACAAAGATCAACTGAACCAGGTTAGGCAACTCTTGAACGATGACCCTTCAAATTCTGAATATGCTGACATGGAGAGGGAACTTTCCGAGGTCATTGCTTTGACTGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCCCTGCTCCTCCTAACGCTGCTGCTGCCTCTCCAACCTTGTCCATACATAATGACAATCAAGTGCTGGATAGCAGCTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGGTATGATGCAACAGTTGAGGCTTATACACCAAATGGTTATTATGTAAGCTATGACAATTGGGGTAATAAAGAAGAGGTTGATCCTGCCAATATAAGGTCAATTCAAGAAGGTTCTGTTGATGCTTTATTAGAAGCTGAGCGAGTTGCTGAAGCAACAAAACAGGCCATCAAACGAAAAATTGTGCAAGCTGCATCTATCGATTTACAGTCTCGGAGTCTACCTGCAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGCTTCGAAACGCAAGAAAATACATGCCTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGA

Predicted protein sequences of Glyma.07g272500

Limit To All Plant Sequences

>Glyma.07g272500.1.p sequence-type=predicted peptide transcript=Glyma.07g272500.1 locus=Glyma.07g272500 ID=Glyma.07g272500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQGQGVDEVNIEELASNLSLYKDQLNQVRQLLNDDPSNSEYADMERELSEVIALTEELLATAKQNEIPAPPNAAAASPTLSIHNDNQVLDSSSDHQEKLPVGTKVQAVWSEDGEWYDATVEAYTPNGYYVSYDNWGNKEEVDPANIRSIQEGSVDALLEAERVAEATKQAIKRKIVQAASIDLQSRSLPAKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEVTQNKRQNAWQQFQSTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKREKHFHLKDGTVENDE*

>Glyma.07g272500.2.p sequence-type=predicted peptide transcript=Glyma.07g272500.2 locus=Glyma.07g272500 ID=Glyma.07g272500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQGQGVDEVNIEELASNLSLYKDQLNQVRQLLNDDPSNSEYADMERELSEVIALTEELLATAKQNEIPAPPNAAAASPTLSIHNDNQVLDSSSDHQEKLPVGTKVQAVWSEDGEWYDATVEAYTPNGYYVSYDNWGNKEEVDPANIRSIQEGSVDALLEAERVAEATKQAIKRKIVQAASIDLQSRSLPAKLRIEADDPEDVLRNARKYMPLSQRCGWSNLKSHKISGKMLGSNFSQPKERQRRLVSSLEENGRVFLNLLMILRERLV*

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