SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02560.2 | AT | cullin-associated and neddylation dissociated | JGI | N/A | IEA |
| GO:0010265 | GO-bp | SCF complex assembly | EnsemblGenomes | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| KOG1824 | KOG | TATA-binding protein-interacting protein | JGI | N/A | IEA |
| PTHR12696 | Panther | TIP120 | JGI | N/A | IEA |
| PF02985 | PFAM | HEAT repeat | JGI | N/A | IEA |
| PF08623 | PFAM | TATA-binding protein interacting (TIP20) | JGI | N/A | IEA |
|
Glyma.07g272400 not represented in the dataset |
Glyma.07g272400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g002000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g40231 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g272400.1 sequence-type=CDS polypeptide=Glyma.07g272400.1.p locus=Glyma.07g272400 ID=Glyma.07g272400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCAATGAGTTGAGCAAAGCAACGTTTAAGGCCGATGCTGATCTGGAGGTCAAATTGACAAACATCATCATACAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGACCAGTAAACTATGTGACAAATTGCTAAATGGGAAGGATCAGCATCGCGACATTGCTAGCATAGCTTTGAAGACAGTTGTTGCAGAAGTTTCTACTCAGTCTCTTGCACAATCTATTCTCCAGACTCTCACGCCGCAATTGATAAGAGGAATTACTGGTCCTGGAATGGGTTCCGAGATTAAATGTGAATCTCTGGATATTTTATGTGATGTCCTTCATAAATTTGGGAATCTAATGGCAGCGGATCATGAACTATTATTAAGTTCCTTGCTTTCTCAGTTGAGTTCTAATCAAGCTAGTGTGCGCAAGAAGACTGTGGCATGCATTGCATCTCTCTCTTCAAGCCTGTCAGATGATTTGTTGGCAAAGGCAACTGTTGAAGTTGTTACTAACTTGAAAAATAAAGTTGCCAAGTCCGAAATGATCCGTACAAATATACAGATGATCGGTGCTTTGAGTCGAGCTGTTGGCTACCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGGCACTGGAAAGCTTTCTCCTTAGGTGTCCAAGGGATATTTCTGTTTACTGTGATGAAATTCTTCATTTGACACTAGAATATCTAAGTTATGATCCAAATTTCACTGACAACATGGAGGAGGATACTGATGACGAAGGTCTTGAAGAGGAGGAGGATGATGAGAGTGCAAATGAATATACAGATGATGAAGATGTAAGCTGGAAAGTTCGGAGAGCAGCAGCTAAATGTTTAGCAGCATTGATTGTTTCTCGTCCTGAGATCTTGTCAAAGCTGTATGATGAGGCTTGTCCAAAACTAATAGACAGATTCAAAGAGAGGGAAGAAAATGTCAAGATGGATGTATTTAATACTTTCATTGAGCTCTTGCGTCAAACTGGAAATGTCACAAAAGGGCAGACAGATGCAGATATGAGTCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGGTTGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGTCTTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGATTGGTATTATCTTCACATTCTCCTGATGTTTTTCACCCTTACATCAAGGCTCTTTCTGCCCCTGTTCTGTCAGCTGTTGGTGAGCGTTATTACAAGGTCACTGCAGAGGCCTTGAGAGTATGTGGAGAACTTGTCCGTGTTGTGCGGCCAAACATTGAGGGGTCTGGTTTTGATTTCAGACCATATGTTCATCCCATATATAACGGCATTATGTCACGCTTAATAAACCAAGATCAGGATCAGGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGGCATTTGCTGTCATTGCTGCTTCTCCACTTCGGGTGGATCTATCATGTGTTCTAGAGCATGTGGTAGCAGAGTTGACTGCATTCCTTCGAAAAGCTAATCGTGCTCTAAGGCAGGCTACCTTGGGAACCTTAAATTCACTTATAGTTGCTTATGGTGATAAGATTGTTTTGTCTGCTTATGAAGTTATTATCGTAGAACTGTCGGGACTAATTAGTGATTCTGACTTGCATATGACAGCTCTTGCCCTGGAACTCTGCTGCACATTAATGGGTGACAAGAGGTCAAATCAAAGTATTGGTTTGGCCGTTAGAAACAAAGTTCTTCCTCAAGCTTTAACATTAATTAAAAGCTCATTGTTGCAGGGGCAAGCACTTTCGGCTTTGCAAAACTTTTTTGCTGCTTTAGTCTATTCTGCAAATACTAGTTTTGATTCTCTGCTGGAGTCACTACTTGCCTGTGCTAAGCCTTCTCCACAGTCTGGTGGCATTGCTAAACAAGCTCTGCATTCGATAGCTCAGTGTGTTGCTGTTCTATGCCTTGCTGCTGGTGATCAGAAGTGTTCATCTACAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCCGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAGGATCTAAGTACACATGCACACATAGAAAATATTGTTATTGAATCTTTCCAGTCCCCTTTTGAAGAGATAAAGTCTGCTGCCTCATATGCTCTTGGTAACATTGCTGTTGGTAATCTTCCAAAATACTTGCCATTTATCTTGGATCAGATTGATAATCAGCAGAAGAAACAATATCTCTTGCTTCATTCTTTGAAAGAGGTAATTGTGAGACAATCTGTAGATAAAGCAGAGTTTCAAGAGTCCAGTGTGGAGAAAATACTTAATTTACTCTTCAACCACTGTGAAAGTGAGGAAGAGGGAGTGCGCAATGTAGTGGCGGAGTGTTTGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAGGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGCATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAATAAGCCGAATCTCATCAAGGGGCTTCTTCCTGATCTGCTGCCTCTTCTATATGATCAAACTATTGTTAAGCAAGAGCTCATAAGGACAGTTGATCTTGGTCCTTTTAAGCATATTGTGGATGATGGACTTGAATTGAGGAAGGCGGCTTTTGAATGTGTAGACACATTGCTGGATAGTTGCCTTGATCAAGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTGACAAGTGTCCTTCTGCAGTCTTGGCAGTGTTAGATTCATTGGTTGATCCTCTCCAGAAGACTATTAATTTTAAGCCAAAGCAAGACGCTGTCAAGCAAGAAGTAGATCGCAATGAAGACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAAATCACAAACTCTCTGGGATAAATATTATTCAATCCGCAATGAATGA
>Glyma.07g272400.1.p sequence-type=predicted peptide transcript=Glyma.07g272400.1 locus=Glyma.07g272400 ID=Glyma.07g272400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANLALTSILEKMTGKDKDYRYMATSDLLNELSKATFKADADLEVKLTNIIIQQLDDAAGDVSGLAVKCLAPLVRKVSEVRVVEMTSKLCDKLLNGKDQHRDIASIALKTVVAEVSTQSLAQSILQTLTPQLIRGITGPGMGSEIKCESLDILCDVLHKFGNLMAADHELLLSSLLSQLSSNQASVRKKTVACIASLSSSLSDDLLAKATVEVVTNLKNKVAKSEMIRTNIQMIGALSRAVGYRFGPHLGDTVPVLINYCTNASENDEELREYSLQALESFLLRCPRDISVYCDEILHLTLEYLSYDPNFTDNMEEDTDDEGLEEEEDDESANEYTDDEDVSWKVRRAAAKCLAALIVSRPEILSKLYDEACPKLIDRFKEREENVKMDVFNTFIELLRQTGNVTKGQTDADMSPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLKELVVVLPNCLADHIGSLIPGIEKALNDKSSTSNLKIEALTFTRLVLSSHSPDVFHPYIKALSAPVLSAVGERYYKVTAEALRVCGELVRVVRPNIEGSGFDFRPYVHPIYNGIMSRLINQDQDQEVKECAISCMGLIVSTFGDHLNAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLRVDLSCVLEHVVAELTAFLRKANRALRQATLGTLNSLIVAYGDKIVLSAYEVIIVELSGLISDSDLHMTALALELCCTLMGDKRSNQSIGLAVRNKVLPQALTLIKSSLLQGQALSALQNFFAALVYSANTSFDSLLESLLACAKPSPQSGGIAKQALHSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSSNSAKQHLALLCLGEIGRRKDLSTHAHIENIVIESFQSPFEEIKSAASYALGNIAVGNLPKYLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQESSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPVKLIPALKVRRTSPAAFTRATVVIAVKYSIVERPEKIDEIIYPEISSFLMLIKDNDRHVRRAAVLAISTFAHNKPNLIKGLLPDLLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNRISGGDCSVKFKNLMNEISKSQTLWDKYYSIRNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
