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Report for Sequence Feature Glyma.07g271200

Feature Type:gene_model
Chromosome:Gm07
Start:44377847
stop:44379799
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g271200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12780.1AT UDP-D-glucose/UDP-D-galactose 4-epimerase 1 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0006012GO-bp galactose metabolic process EnsemblGenomesN/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0034968GO-bp histone lysine methylation EnsemblGenomesN/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0045226GO-bp extracellular polysaccharide biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0003978GO-mf UDP-glucose 4-epimerase activity EnsemblGenomesN/AIEA
GO:0008831GO-mf dTDP-4-dehydrorhamnose reductase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
GO:0016857GO-mf racemase and epimerase activity, acting on carbohydrates and derivatives EnsemblGenomesN/AIEA
GO:0018024GO-mf histone-lysine N-methyltransferase activity EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG1371 KOG UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF39Panther UDP-GLUCOSE 4-EPIMERASE JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-3821SoyCyc9 D-galactose detoxification Plant Metabolic Network ISS
PWY-6317SoyCyc9 D-galactose degradation I (Leloir pathway) Plant Metabolic Network ISS
PWY-6527SoyCyc9 stachyose degradation Plant Metabolic Network ISS
PWY-7344SoyCyc9 UDP-α-D-galactose biosynthesis Plant Metabolic Network ISS
GN7V-55110SoyCyc9-rxn UDP-glucose 4-epimerase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g271200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g271200 not represented in the dataset
Glyma.07g271200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.07g271200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g40150 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g271200
>Glyma.07g271200.2 sequence-type=transcript locus=Glyma.07g271200 ID=Glyma.07g271200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATTGCGGTGAGTGACCGACAGTTGGATTGTAGTGGAAAAGATGAAATGAGAGAATTATTATGTGTCTATAATAATAGTTATTGAAAGTTGTGAGGAAGGAGGAGGATGGTGTCCCCGATGTCAACGGTTCTGGTGACGGGAGGGGCAGGCTTCATCGGATCCCACACGGTGCTTCAGCTTCTGAAGCAGGGCTTCAGGGTTTCCATCATCGACAACCTTGACAATTCCCTCATCGAAGCCGTTCACAGGGTTCGCCGCCTGGTCGGTCCTCATCTTTCCAACAACCTCACCTTCTTCCACGGAGATCTCCGCAATGTTCAGGATTTGGAGGCAGTGTTCTCGAAAAGCAAGTTTGATGCGGTGATCCACTTTGCTGGGCTGAAAGGTGTCGGCGAAAGCGTTGCAAAGCCCCGGCGTTATTACGACAACAATCTAGTGGGGACTATAAACCTTTTTGAAGCAATGGCTAAATACAAGTGTAAAAAAATGGTTATATCATCATCGGCAACTGTTTATGGGGAAGCTGATAGAGTCCCATGTGTGGAGGAGGAGGTGCATTTGCAGGCCATGAATCCGTATGGAAGAACAAAGCTGTTCGTAGAAGAAATAGCCAGAGACATCCAGAGGGCGGAGACAGAATGGAGGATCATTCTGCTTCGATACTTCAATCCGGTTGGTGCCCACGAGAGTGGACAGATTGGGGAAGATCCAAGGGGAATCCCCAATAACCTCATGCCTTACATTCACCAAGTCGCCGTTGGCAGATTGCCTCAGCTCAATGTTTATGGTCATGACTATCCCACTAAAGATGGCACCCCGATCCGGGACTATATCCATGTAATGGACTTGGCAGATGGCCACATTGCTGCCCTCCGAAAGCTTTTTGCAACAGACCACATCGGTATCGTATCGTATCATATGTGCTTTCAATTCAATTTCTTAATTATCATATCTTTGTTCTTGATAACTTAATAAATTAGGTTGTAGTGCCTACAATCTTGGAACTGGGCGTGGCACATCCGTGCTTGAAATGGTTGCTGCCTTTGAAAAAGCTTCCGGCAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCCGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACGGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAAATGAAATTGGGTTGTACTTGGAGGAGGTCTTCCTCCACCATATCATATCATCTCCACTCCAGATATAATATGTTGATGTTTCTTTTGTTGATACAATTGATTGATTGATTCTTTACACTACGTATGTTGTTGGCCTAAATAATTGTCTGATTATAATTTTTCATATTGTAGAAAGGACCACTTTGATGAGTCATATATGAGAATTAATTTAAATGATTTCCCACG

>Glyma.07g271200.3 sequence-type=transcript locus=Glyma.07g271200 ID=Glyma.07g271200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATTGCGGTGAGTGACCGACAGTTGGATTGTAGTGGAAAAGATGAAATGAGAGAATTATTATGTGTCTATAATAATAGTTATTGAAAGTTGTGAGGAAGGAGGAGGATGGTGTCCCCGATGTCAACGGTTCTGGTGACGGGAGGGGCAGGCTTCATCGGATCCCACACGGTGCTTCAGCTTCTGAAGCAGGGCTTCAGGGTTTCCATCATCGACAACCTTGACAATTCCCTCATCGAAGCCGTTCACAGGGTTCGCCGCCTGGTCGGTCCTCATCTTTCCAACAACCTCACCTTCTTCCACGGAGATCTCCGCAATGTTCAGGATTTGGAGGCAGTGTTCTCGAAAAGCAAGTTTGATGCGGTGATCCACTTTGCTGGGCTGAAAGGTGTCGGCGAAAGCGTTGCAAAGCCCCGGCGTTATTACGACAACAATCTAGTGGGGACTATAAACCTTTTTGAAGCAATGGCTAAATACAAGTGTAAAAAAATGGTTATATCATCATCGGCAACTGTTTATGGGGAAGCTGATAGAGTCCCATGTGTGGAGGAGGAGGTGCATTTGCAGGCCATGAATCCGTATGGAAGAACAAAGCTGTTCGTAGAAGAAATAGCCAGAGACATCCAGAGGGCGGAGACAGAATGGAGGATCATTCTGCTTCGATACTTCAATCCGGTTGGTGCCCACGAGAGTGGACAGATTGGGGAAGATCCAAGGGGAATCCCCAATAACCTCATGCCTTACATTCACCAAGTCGCCGTTGGCAGATTGCCTCAGCTCAATGTTTATGGTCATGACTATCCCACTAAAGATGGCACCCCGGtcactcactcactcactcactcttgtctttcattctcttttcttccttccttccttccttcttcaGCTTACAACAATATATCTGCAGATCCGGGACTATATCCATGTAATGGACTTGGCAGATGGCCACATTGCTGCCCTCCGAAAGCTTTTTGCAACAGACCACATCGGTTGTAGTGCCTACAATCTTGGAACTGGGCGTGGCACATCCGTGCTTGAAATGGTTGCTGCCTTTGAAAAAGCTTCCGGCAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCCGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACGGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAAATGAAATTGGGTTGTACTTGGAGGAGGTCTTCCTCCACCATATCATATCATCTCCACTCCAGATATAATATGTTGATGTTTCTTTTGTTGATACAATTGATTGATTGATTCTTTACACTACGTATGTTGTTGGCCTAAATAATTGTCTGATTATAATTTTTCATATTGTAGAAAGGACCACTTTGATGAGTCATATATGAGAATTAATTTAAATGATTTCCCACG
Coding sequences of Glyma.07g271200
>Glyma.07g271200.1 sequence-type=CDS polypeptide=Glyma.07g271200.1.p locus=Glyma.07g271200 ID=Glyma.07g271200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTCCCCGATGTCAACGGTTCTGGTGACGGGAGGGGCAGGCTTCATCGGATCCCACACGGTGCTTCAGCTTCTGAAGCAGGGCTTCAGGGTTTCCATCATCGACAACCTTGACAATTCCCTCATCGAAGCCGTTCACAGGGTTCGCCGCCTGGTCGGTCCTCATCTTTCCAACAACCTCACCTTCTTCCACGGAGATCTCCGCAATGTTCAGGATTTGGAGGCAGTGTTCTCGAAAAGCAAGTTTGATGCGGTGATCCACTTTGCTGGGCTGAAAGGTGTCGGCGAAAGCGTTGCAAAGCCCCGGCGTTATTACGACAACAATCTAGTGGGGACTATAAACCTTTTTGAAGCAATGGCTAAATACAAGTGTAAAAAAATGGTTATATCATCATCGGCAACTGTTTATGGGGAAGCTGATAGAGTCCCATGTGTGGAGGAGGAGGTGCATTTGCAGGCCATGAATCCGTATGGAAGAACAAAGCTGTTCGTAGAAGAAATAGCCAGAGACATCCAGAGGGCGGAGACAGAATGGAGGATCATTCTGCTTCGATACTTCAATCCGGTTGGTGCCCACGAGAGTGGACAGATTGGGGAAGATCCAAGGGGAATCCCCAATAACCTCATGCCTTACATTCACCAAGTCGCCGTTGGCAGATTGCCTCAGCTCAATGTTTATGGTCATGACTATCCCACTAAAGATGGCACCCCGATCCGGGACTATATCCATGTAATGGACTTGGCAGATGGCCACATTGCTGCCCTCCGAAAGCTTTTTGCAACAGACCACATCGGTTGTAGTGCCTACAATCTTGGAACTGGGCGTGGCACATCCGTGCTTGAAATGGTTGCTGCCTTTGAAAAAGCTTCCGGCAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCCGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACGGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAA

>Glyma.07g271200.2 sequence-type=CDS polypeptide=Glyma.07g271200.2.p locus=Glyma.07g271200 ID=Glyma.07g271200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTCCCCGATGTCAACGGTTCTGGTGACGGGAGGGGCAGGCTTCATCGGATCCCACACGGTGCTTCAGCTTCTGAAGCAGGGCTTCAGGGTTTCCATCATCGACAACCTTGACAATTCCCTCATCGAAGCCGTTCACAGGGTTCGCCGCCTGGTCGGTCCTCATCTTTCCAACAACCTCACCTTCTTCCACGGAGATCTCCGCAATGTTCAGGATTTGGAGGCAGTGTTCTCGAAAAGCAAGTTTGATGCGGTGATCCACTTTGCTGGGCTGAAAGGTGTCGGCGAAAGCGTTGCAAAGCCCCGGCGTTATTACGACAACAATCTAGTGGGGACTATAAACCTTTTTGAAGCAATGGCTAAATACAAGTGTAAAAAAATGGTTATATCATCATCGGCAACTGTTTATGGGGAAGCTGATAGAGTCCCATGTGTGGAGGAGGAGGTGCATTTGCAGGCCATGAATCCGTATGGAAGAACAAAGCTGTTCGTAGAAGAAATAGCCAGAGACATCCAGAGGGCGGAGACAGAATGGAGGATCATTCTGCTTCGATACTTCAATCCGGTTGGTGCCCACGAGAGTGGACAGATTGGGGAAGATCCAAGGGGAATCCCCAATAACCTCATGCCTTACATTCACCAAGTCGCCGTTGGCAGATTGCCTCAGCTCAATGTTTATGGTCATGACTATCCCACTAAAGATGGCACCCCGATCCGGGACTATATCCATGTAATGGACTTGGCAGATGGCCACATTGCTGCCCTCCGAAAGCTTTTTGCAACAGACCACATCGGTATCGTATCGTATCATATGTGCTTTCAATTCAATTTCTTAATTATCATATCTTTGTTCTTGATAACTTAA

>Glyma.07g271200.3 sequence-type=CDS polypeptide=Glyma.07g271200.3.p locus=Glyma.07g271200 ID=Glyma.07g271200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTCCCCGATGTCAACGGTTCTGGTGACGGGAGGGGCAGGCTTCATCGGATCCCACACGGTGCTTCAGCTTCTGAAGCAGGGCTTCAGGGTTTCCATCATCGACAACCTTGACAATTCCCTCATCGAAGCCGTTCACAGGGTTCGCCGCCTGGTCGGTCCTCATCTTTCCAACAACCTCACCTTCTTCCACGGAGATCTCCGCAATGTTCAGGATTTGGAGGCAGTGTTCTCGAAAAGCAAGTTTGATGCGGTGATCCACTTTGCTGGGCTGAAAGGTGTCGGCGAAAGCGTTGCAAAGCCCCGGCGTTATTACGACAACAATCTAGTGGGGACTATAAACCTTTTTGAAGCAATGGCTAAATACAAGTGTAAAAAAATGGTTATATCATCATCGGCAACTGTTTATGGGGAAGCTGATAGAGTCCCATGTGTGGAGGAGGAGGTGCATTTGCAGGCCATGAATCCGTATGGAAGAACAAAGCTGTTCGTAGAAGAAATAGCCAGAGACATCCAGAGGGCGGAGACAGAATGGAGGATCATTCTGCTTCGATACTTCAATCCGGTTGGTGCCCACGAGAGTGGACAGATTGGGGAAGATCCAAGGGGAATCCCCAATAACCTCATGCCTTACATTCACCAAGTCGCCGTTGGCAGATTGCCTCAGCTCAATGTTTATGGTCATGACTATCCCACTAAAGATGGCACCCCGGTCACTCACTCACTCACTCACTCTTGTCTTTCATTCTCTTTTCTTCCTTCCTTCCTTCCTTCTTCAGCTTACAACAATATATCTGCAGATCCGGGACTATATCCATGTAATGGACTTGGCAGATGGCCACATTGCTGCCCTCCGAAAGCTTTTTGCAACAGACCACATCGGTTGTAG
Predicted protein sequences of Glyma.07g271200
>Glyma.07g271200.1.p sequence-type=predicted peptide transcript=Glyma.07g271200.1 locus=Glyma.07g271200 ID=Glyma.07g271200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSPMSTVLVTGGAGFIGSHTVLQLLKQGFRVSIIDNLDNSLIEAVHRVRRLVGPHLSNNLTFFHGDLRNVQDLEAVFSKSKFDAVIHFAGLKGVGESVAKPRRYYDNNLVGTINLFEAMAKYKCKKMVISSSATVYGEADRVPCVEEEVHLQAMNPYGRTKLFVEEIARDIQRAETEWRIILLRYFNPVGAHESGQIGEDPRGIPNNLMPYIHQVAVGRLPQLNVYGHDYPTKDGTPIRDYIHVMDLADGHIAALRKLFATDHIGCSAYNLGTGRGTSVLEMVAAFEKASGKKIPLKMCPRRPGDATAVYASTDKAEKELGWKAKYGIEEMCRDLWNWTSKNPWGYQGKH*

>Glyma.07g271200.2.p sequence-type=predicted peptide transcript=Glyma.07g271200.2 locus=Glyma.07g271200 ID=Glyma.07g271200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSPMSTVLVTGGAGFIGSHTVLQLLKQGFRVSIIDNLDNSLIEAVHRVRRLVGPHLSNNLTFFHGDLRNVQDLEAVFSKSKFDAVIHFAGLKGVGESVAKPRRYYDNNLVGTINLFEAMAKYKCKKMVISSSATVYGEADRVPCVEEEVHLQAMNPYGRTKLFVEEIARDIQRAETEWRIILLRYFNPVGAHESGQIGEDPRGIPNNLMPYIHQVAVGRLPQLNVYGHDYPTKDGTPIRDYIHVMDLADGHIAALRKLFATDHIGIVSYHMCFQFNFLIIISLFLIT*

>Glyma.07g271200.3.p sequence-type=predicted peptide transcript=Glyma.07g271200.3 locus=Glyma.07g271200 ID=Glyma.07g271200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSPMSTVLVTGGAGFIGSHTVLQLLKQGFRVSIIDNLDNSLIEAVHRVRRLVGPHLSNNLTFFHGDLRNVQDLEAVFSKSKFDAVIHFAGLKGVGESVAKPRRYYDNNLVGTINLFEAMAKYKCKKMVISSSATVYGEADRVPCVEEEVHLQAMNPYGRTKLFVEEIARDIQRAETEWRIILLRYFNPVGAHESGQIGEDPRGIPNNLMPYIHQVAVGRLPQLNVYGHDYPTKDGTPVTHSLTHSCLSFSFLPSFLPSSAYNNISADPGLYPCNGLGRWPHCCPPKAFCNRPHRL*






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