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Report for Sequence Feature Glyma.07g268500

Feature Type:gene_model
Chromosome:Gm07
Start:44170808
stop:44175646
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g268500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47720.2AT Thiolase family protein JGI N/AIEA
GO:0006635GO-bp fatty acid beta-oxidation EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003985GO-mf acetyl-CoA C-acetyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups JGI N/AIEA
KOG1390 KOG Acetyl-CoA acetyltransferase JGI N/AIEA
PTHR18919Panther ACETYL-COA C-ACYLTRANSFERASE JGI N/AIEA
PTHR18919:SF7Panther JGI N/AIEA
PF00108PFAM Thiolase, N-terminal domain JGI N/AIEA
PF02803PFAM Thiolase, C-terminal domain JGI N/AIEA
LYSINE-DEG2-PWYSoyCyc9 lysine degradation II Plant Metabolic Network ISS
PWY-5910SoyCyc9 superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Plant Metabolic Network ISS
PWY-922SoyCyc9 mevalonate pathway I Plant Metabolic Network ISS
GN7V-47291SoyCyc9-rxn acetyl-CoA C-acetyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g268500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g268500 not represented in the dataset
Glyma.07g268500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g268500
ParalogEvidenceComments
Glyma.17g005300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g268500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g39870 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g268500
>Glyma.07g268500.2 sequence-type=transcript locus=Glyma.07g268500 ID=Glyma.07g268500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAAGACGCATTGCATGGCATGCAAAAGACAAGctgcttcttctgtctctctAAACTAAACTAACATTAACATCACATCCGGATTGCTCTGTTACTGTGGATTAAAAGGCCGTCTTTCCTCATTTCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGGTATTGAGACAGAAGAGAGGGAAGTATGGTGTTGCTGCCATCTGCAACGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCCGTGGGACGTTCTTTATTATGACAAAGATCATACTACTTTGCAACACTTGTACTTTTATTTTTTTCTCTTTTTTTAAAGGACAAAACATTTAATAAGTATAGTTACCAGCAAAGTATGAGTGATACTAGATTCAACCCTCTTAAGCAAAGTCTTGAGTTTGAGTACTGTGAATGAAAAAAATGTAATTGAGAAGAGATATCTCACTAAAGATTGTTTACCAGATTTCTCTATAAAGATTAGTCATTAACAAAATTAGTGGTACTCTACAATGACAACAAAAAGAAAAACATGTAATAACTAATAAGTTTGGTCAAAGGAAGAAATGGTTTTAGTAA

>Glyma.07g268500.3 sequence-type=transcript locus=Glyma.07g268500 ID=Glyma.07g268500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATttctcttctcttctctttagctgcttcttctgtctctctAAACTAAACTAACATTAACATCACATCCGGATTGCTCTGTTACTGTGGATTAAAAGGCCGTCTTTCCTCATTTCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGTGAGTGTTTAAGTGAATATGCTCATTTTTTTGGCTGTTCTAGCTGCTTCAGCATTTTGGTTCCTCCATTCTGCCATGGTATAGTGGCCCAATAATAGATAATTCATGTACTTCCTATCAAATGCAGGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGGTATTGAGACAGAAGAGAGGGAAGTATGGTGTTGCTGCCATCTGCAACGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCCGTGGGACGTTCTTTATTATGACAAAGATCATACTACTTTGCAACACTTGTACTTTTATTTTTTTCTCTTTTTTTAAAGGACAAAACATTTAATAAGTATAGTTACCAGCAAAGTATGAGTGATACTAGATTCAACCCTCTTAAGCAAAGTCTTGAGTTTGAGTACTGTGAATGAAAAAAATGTAATTGAGAAGAGATATCTCACTAAAGATTGTTTACCAGATTTCTCTATAAAGATTAGTCATT
Coding sequences of Glyma.07g268500
>Glyma.07g268500.1 sequence-type=CDS polypeptide=Glyma.07g268500.1.p locus=Glyma.07g268500 ID=Glyma.07g268500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGGTATTGAGACAGAAGAGAGGGAAGTATGGTGTTGCTGCCATCTGCAACGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCCGTGGGACGTTCTTTATTATGA

>Glyma.07g268500.2 sequence-type=CDS polypeptide=Glyma.07g268500.2.p locus=Glyma.07g268500 ID=Glyma.07g268500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGGTATTGAGACAGAAGAGAGGGAAGTATGGTGTTGCTGCCATCTGCAACGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCCGTGGGACGTTCTTTATTATGA

>Glyma.07g268500.3 sequence-type=CDS polypeptide=Glyma.07g268500.3.p locus=Glyma.07g268500 ID=Glyma.07g268500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGTGAGTGTTTAA
Predicted protein sequences of Glyma.07g268500
>Glyma.07g268500.1.p sequence-type=predicted peptide transcript=Glyma.07g268500.1 locus=Glyma.07g268500 ID=Glyma.07g268500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTSAKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKSALERANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYLAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGACAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASTIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLALNPEKVNVYGGAVSLGHPLGCSGARILVTLLGVLRQKRGKYGVAAICNGGGGASALVLELMPVAVGRSLL*

>Glyma.07g268500.2.p sequence-type=predicted peptide transcript=Glyma.07g268500.2 locus=Glyma.07g268500 ID=Glyma.07g268500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTSAKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKSALERANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYLAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGACAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASTIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLALNPEKVNVYGGAVSLGHPLGCSGARILVTLLGVLRQKRGKYGVAAICNGGGGASALVLELMPVAVGRSLL*

>Glyma.07g268500.3.p sequence-type=predicted peptide transcript=Glyma.07g268500.3 locus=Glyma.07g268500 ID=Glyma.07g268500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTSAKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKSALERANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYLAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGACAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASTIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLALNPVSV*






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