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Report for Sequence Feature Glyma.07g267900

Feature Type:gene_model
Chromosome:Gm07
Start:44116325
stop:44119291
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g267900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16360.3AT 5'-AMP-activated protein kinase beta-2 subunit protein JGI N/AIEA
GO:0009744GO-bp response to sucrose EnsemblGenomesN/AIEA
GO:0043562GO-bp cellular response to nitrogen levels EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1616 KOG Protein involved in Snf1 protein kinase complex assembly JGI N/AIEA
PTHR10343Panther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT JGI N/AIEA
PTHR10343:SF10Panther JGI N/AIEA
PF04739PFAM 5'-AMP-activated protein kinase beta subunit, interation domain JGI N/AIEA

Expression Patterns of Glyma.07g267900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g267900 not represented in the dataset
Glyma.07g267900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g267900
ParalogEvidenceComments
Glyma.17g006000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g267900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g39793 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g267900
>Glyma.07g267900.1 sequence-type=CDS polypeptide=Glyma.07g267900.1.p locus=Glyma.07g267900 ID=Glyma.07g267900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTCAGTCTCCTCCCACCACCCCTACGACTACCCATTCCCCCCTCTTATTCGCTCCTCAGGTTCCCGTGGTTCCGCTACAAAGACCTGATGACATTCATGTTCCAAGTTGTTCCTGGATGGAGACAACTTCAGGGTATGAAGATATGTACACTCAAGTAGGAATCCCAACAATGATTACTTGGAGTTATGATGGAAAGGAAGTAGCTGTCGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCCCTGCAGAGATCAGGGAAGGACTTTGCCTTAATGAGGTACTTCCGTCTGGTGTTTACCAGTACAGATTTATTGTGGATGGACGCAAGAAGTACACTCCAGATTCGCCTTGGGCCCAAGATGATGCTGGGAATGCTTACAACATCTTGGACTTACAGTCCTGAAGACATTGGAAGCATCTCTAGTTTTGAGCCTCCTCAATCACCAGACTCAAGTTATGATAACTTACATCTTAGTTCTGAAGATTATGCTAAGGAGCCACCATTAGTTCCTCCACTCTTGCAAATGACACTGCTAAATGTGCCTGCAACAAATATGGAAATCCAACCTCCTATGTCAAGACCTCGACATGGAGTGCTGAATCATCTTTACACCCAGAAAGGAAAGAGCAGTCCTTCAGTGGCTGGCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTACTGTACAAGTCGTTGCAAAGTAAACCATAA
Predicted protein sequences of Glyma.07g267900
>Glyma.07g267900.1.p sequence-type=predicted peptide transcript=Glyma.07g267900.1 locus=Glyma.07g267900 ID=Glyma.07g267900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPQSPPTTPTTTHSPLLFAPQVPVVPLQRPDDIHVPSCSWMETTSGYEDMYTQVGIPTMITWSYDGKEVAVEGSWDNWKTRMPLQRSGKDFALMRYFRLVFTSTDLLWMDARSTLQIRLGPKMMLGMLTTSWTYSPEDIGSISSFEPPQSPDSSYDNLHLSSEDYAKEPPLVPPLLQMTLLNVPATNMEIQPPMSRPRHGVLNHLYTQKGKSSPSVAGLGTTHRFLAKYVTVVLYKSLQSKP*






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