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Report for Sequence Feature Glyma.07g265600

Feature Type:gene_model
Chromosome:Gm07
Start:43952897
stop:43958708
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g265600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12570.1AT ubiquitin protein ligase 5 JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein ligase activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG0940 KOG Ubiquitin protein ligase RSP5/NEDD4 JGI N/AIEA
PTHR11254Panther HECT DOMAIN UBIQUITIN-PROTEIN LIGASE JGI N/AIEA
PTHR11254:SF52Panther JGI N/AIEA
PF00240PFAM Ubiquitin family JGI N/AIEA
PF00632PFAM HECT-domain (ubiquitin-transferase) JGI N/AIEA

Expression Patterns of Glyma.07g265600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g265600 not represented in the dataset
Glyma.07g265600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g265600
ParalogEvidenceComments
Glyma.17g008400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g265600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g39546 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g265600
>Glyma.07g265600.1 sequence-type=CDS polypeptide=Glyma.07g265600.1.p locus=Glyma.07g265600 ID=Glyma.07g265600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGTCATCGACACCCCCGCCGTTCACCACCGCAGCGGGGGCGCCACCGATCACCGTCACCCGTCCAAGCGCAAATTCGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAAGACGAGGCCAAGGCGGTGAATTCCTGGTCCGCCTCCTCCTCCTCCTCCTCCTCCGACGCCGGCGGCTGCTCCTCCTTGCAGCAGCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCTGCCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACACGGTCAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGTTAATTTATCGCGGGAAACAGCTCCAGTGGGAACAGACTCTTGCCGAGTGTTTCATTCAAAACGACGCCAACCTTCAATTAGTTGGCCGTATGCGCAGTACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCCGCGGCGAGACGGTTCACGATGCCTTGAAAACCGTCAAGGGTTTGATGACCAGTTACTTGAACATGACTCCCAGAATTGACAACGACTCTGCCTCTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCCGCTGTGCTTGTTATGCTCTATGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATATTTTGTCCAAGGCATTGCACGGCCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTCTCACGACCCTTTGTATCTCTTTTGTCGTAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGGTTCCGGTTCGGATAATGTTAAGGGGCTGGTTTTGATTCAGGATATTTTCCCCTTTGTTTGTGAGCTTGCTAACAGCTTGTTGAGGGATCTGGACTTGAGTATTGTGTCCCCCTCGGCCGCAGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTACTGCCTTTGAGGACTGGAATTAAGGAGCAACAGGCTGTCAAGGATTCTATGGCTCAAGACAAACACCACAAGCTCACAGAAGAGATTGAATATCTTCATGGTTTGTACGTTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAGAGTTTGGCTGGCCAGGAAATGATGGAGGGGGATAATCTTTATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCAAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGGGTGTTTTGACGCGGCAAAGAAGTGTGCTATGTCTGCTGATAGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTATGTAACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAGGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAGTCTTTTGAATACATCGCACGTGCTGAGCCTGACTCCCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCTCTTTTCGTCGCTTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAGAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGACTCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGCTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGTCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCGCACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGAAGAATGACAGCAGATCAAAGGAAGGTTCTTTTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCATCTATGGCTGTCATGAAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA
Predicted protein sequences of Glyma.07g265600
>Glyma.07g265600.1.p sequence-type=predicted peptide transcript=Glyma.07g265600.1 locus=Glyma.07g265600 ID=Glyma.07g265600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVIDTPAVHHRSGGATDHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSSSSSSDAGGCSSLQQQQRSHIQFFVRMMSAGNTIVMQAFPEDTVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECFIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLMTSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNILSKALHGQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGVSYGSGSDNVKGLVLIQDIFPFVCELANSLLRDLDLSIVSPSAAGPLSNDVGDFSAFLLPLRTGIKEQQAVKDSMAQDKHHKLTEEIEYLHGLYVQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWGVLTRQRSVLCLLIVRYAKRTDEHQWILEHRYVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIAIEDIRDADPYLYTSCKQILDMDADFIDSDSLGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFVKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKDRLEVITQEHIGCSFGTW*






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