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Report for Sequence Feature Glyma.07g258800

Feature Type:gene_model
Chromosome:Gm07
Start:43455253
stop:43458188
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g258800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11600.1AT cytochrome P450, family 77, subfamily B, polypeptide 1 JGI N/AIEA
GO:0044550GO-bp secondary metabolite biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen JGI N/AIEA
GO:0016709GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI N/AIEA
PTHR24300Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24300:SF170Panther JGI N/AIEA
PF00067PFAM Cytochrome P450 JGI N/AIEA
PWY-6014SoyCyc9 vernolate biosynthesis I Plant Metabolic Network ISS
PWY-6710SoyCyc9 poly-hydroxy fatty acids biosynthesis Plant Metabolic Network ISS
GN7V-42123SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.07g258800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g258800
ParalogEvidenceComments
Glyma.17g015400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g258800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g38860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g258800
>Glyma.07g258800.1 sequence-type=CDS polypeptide=Glyma.07g258800.1.p locus=Glyma.07g258800 ID=Glyma.07g258800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGTAACAGACGTTATTCTACTGGGCCTGTGCTTGCTCTTCCTCCGCTGGTGGTGGCGCCGATGGTCCACCACCGGCGGAGGCCCGAAGAACCTCCCTCCAGGCCCGCCCGGATGGCCCATAGTCGGGAACCTCTTCCAAGTGATCCTGCAGCGCCGTCATTTCATTTACGTGATCCGCGATTTACATAAAAAATACGGCCCAATCTTCACCATGCAGATGGGTCAGCGCACGTTGATAATCGTGAGCAGCGCGGAGCTCATCCACGAGGCGCTGATCCAGCGAGGCCCATTATTCGCGAGCAGGCCCAAAGACTCCCCCATCCGGCTGATCTTCAGCGTGGGGAAGTGCGCCATCAACTCCGCCGAGTACGGCCCTCTCTGGCGCACCCTAAGGAAGAACTTCGTGACCGAGATGATCACCCCTCTGAGGATAAAACAGTGCAGCTGGATACGAAAATGGGCCATGGAGGCCCACATGAGAAGGATCCAACAAGAGGCCCGCGAGCAAGGGTTTGTTCAAGTTATGAGCAACTGCAGGCTCACCATCTGCAGCATCCTCATCTGCATCTGCTTCGGCGCCAAGATCGAGGAGAAAAGAATCAAAAGCATAGAGAGCATTTTGAAAGATGTCATGCTCATCACGCTTCCCAAGCTTCCAGATTTCTTACCGGTTTTCACTCCGTTGTTCCGCCGTCAGGTGAAGGAAGCTGAGGAGTTAAGGAGGAGGCAGGTGGAGCTGTTGGCGCCGTTGATAAGGAGCAGAAAGGCTTACGTGGAGGGAAATAACAGTGACATGGCGAGTCCTGTTGGTGCTGCTTACGTGGACTCCTTGTTTGGTTTGGAGGTGCCTGGACGAGGACGCTTGGGGGAGGAGGAGCTCGTGACGCTAGTGTCGGAGATTATCAGCGCCGGCACGGACACAAGCGCCACCGCGCTGGAGTGGGCGCTGCTTCATTTGGTTATGGATCAAGAGATTCAAGAGAGGCTGTACAGGGAGATTGTGGGGTGCGTGGGGAAGGATGGTGTGGTTACGGAGAGTCACGTGGAGAAGATGCCTTACCTGAGCGCCGTCGTCAAGGAGACTTTCCGGAGACATCCGCCGAGCCACTTCGTGCTGTCGCACGCCGCCACGGAGGAGACGAAGCTGGGAGGGTATACGGTGCCGAAGGAGGCGAGCGTGGAGTTTTACACGGCGTGGTTGACGGAGGATCCGAGTATGTGGGAGGATCCGAATGAGTTCCGACCCGAGAGGTTTATGAGTGGGGATGGGGTTGACGTGGACGTGACGGGGACGAAAGGGGTGAGGATGATGCCGTTCGGTGTTGGGAGGAGGATTTGCCCAGCGTGGACAATGGGGATTTTGCATATAAATATGCTGCTGGCTAAGATGGTGCATGCTTTCCACTGGCTGCCCAATCCCAACTCTCCACCCGACCCGACTGAGACCTTCGCTTTCACTGTTGTCATGAACAACCCTCTCAAGCCACTTATTGTGCCACGATCCATTTAA
Predicted protein sequences of Glyma.07g258800
>Glyma.07g258800.1.p sequence-type=predicted peptide transcript=Glyma.07g258800.1 locus=Glyma.07g258800 ID=Glyma.07g258800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQVTDVILLGLCLLFLRWWWRRWSTTGGGPKNLPPGPPGWPIVGNLFQVILQRRHFIYVIRDLHKKYGPIFTMQMGQRTLIIVSSAELIHEALIQRGPLFASRPKDSPIRLIFSVGKCAINSAEYGPLWRTLRKNFVTEMITPLRIKQCSWIRKWAMEAHMRRIQQEAREQGFVQVMSNCRLTICSILICICFGAKIEEKRIKSIESILKDVMLITLPKLPDFLPVFTPLFRRQVKEAEELRRRQVELLAPLIRSRKAYVEGNNSDMASPVGAAYVDSLFGLEVPGRGRLGEEELVTLVSEIISAGTDTSATALEWALLHLVMDQEIQERLYREIVGCVGKDGVVTESHVEKMPYLSAVVKETFRRHPPSHFVLSHAATEETKLGGYTVPKEASVEFYTAWLTEDPSMWEDPNEFRPERFMSGDGVDVDVTGTKGVRMMPFGVGRRICPAWTMGILHINMLLAKMVHAFHWLPNPNSPPDPTETFAFTVVMNNPLKPLIVPRSI*






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