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Report for Sequence Feature Glyma.07g256100

Feature Type:gene_model
Chromosome:Gm07
Start:43222307
stop:43226223
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g256100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23600.1AT alpha/beta-Hydrolases superfamily protein JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG3043 KOG Predicted hydrolase related to dienelactone hydrolase JGI N/AIEA
PTHR17630Panther DIENELACTONE HYDROLASE JGI N/AIEA
PTHR17630:SF19Panther JGI N/AIEA
PF01738PFAM Dienelactone hydrolase family JGI N/AIEA
GN7V-67113SoyCyc9-rxn lysozyme Plant Metabolic Network ISS

Expression Patterns of Glyma.07g256100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g256100
ParalogEvidenceComments
Glyma.17g018100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g256100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g38560 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g256100
>Glyma.07g256100.2 sequence-type=transcript locus=Glyma.07g256100 ID=Glyma.07g256100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAGATTTGAAGAGGAACAATTTGTGAGAGTAATGCTGAAGCTTGCTGACAAAGTTGGGGCTGCTGGGTATTATGTAGTTGTTCCTGACCTCTTGGATGGCGAACCCTTTAATCCTCAGAATTCGGACAGGCCCTTTCCTGCTTGGATAAAAGATCATGGACCAGTGGAGAAAGGTGCTGAAGCTACAAAACCCATAATTGAAGCCTTAAAAAGTAAAGGTGTTTCAGCTATTGCAGCTGTTGGTTTTTGTTGGGGTGCAAAGGTTGTGGTTGAACTTGCGAAATCCAGACTGATCCAAACTGCAGTGCTATTGCATCCATCATTTGTCTCCCTGGATGACATCAAGGGTGTTGATATTCCAATTGCTATACTTGGAGCCGAGGTAGACCAAGTTTCTCCTCCAGAGCTTGTGAAACAATTTGAACAAGTCCTAGCTGCTAAATCTGGGGTTGCCAGTTTTGTTAAAATATTTCCCAAAGTTTCACACGGTTGGGCTGTGAGATATAACACTGAAGATGCAGAAACCGTAAAGGTGGCAGAAGAGGCCCACCAGGACTTGCTGGACTGGCTTGCTAAACATCATAAGTGAGACATCTTGCTCTGTTAAGACTGTACAATGGAGTACTTGAGTGAAGGATGTAATGTAAAATGGTACTCAATCAACGTAGCTGTAGTTTGCAAGAAAATAAATGTTGTATTGTTACATGTTGGAAGTGGATCTTATTGCTAGATGATCCTAATAATGTTGCTTTCCGTGATTTGAGTTTGGTGGACAATTGTGATTTGAGATCTTAATAAATCATATTTTAAAACCTTTATGTAAAATGTCTTGTGTATAAGCTGAATAATTTGCGAAAGGAATTTTTTTCCCCTC
Coding sequences of Glyma.07g256100
>Glyma.07g256100.1 sequence-type=CDS polypeptide=Glyma.07g256100.1.p locus=Glyma.07g256100 ID=Glyma.07g256100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGGGCCTCAATGCTGTTCAAATCCACCAAGCTTGAACCCCGGTGGAGGAGTTGGGCATGTGGACAAAGTGGGTGGTGTTGATTCCTATTTCACTGGATCTCCTCACTCCAAACTCGCTGTTCTTATGCTCTCCGATGTTTTTGGATATGAAGCGCCAAATTTAAGGAAGCTTGCTGACAAAGTTGGGGCTGCTGGGTATTATGTAGTTGTTCCTGACCTCTTGGATGGCGAACCCTTTAATCCTCAGAATTCGGACAGGCCCTTTCCTGCTTGGATAAAAGATCATGGACCAGTGGAGAAAGGTGCTGAAGCTACAAAACCCATAATTGAAGCCTTAAAAAGTAAAGGTGTTTCAGCTATTGCAGCTGTTGGTTTTTGTTGGGGTGCAAAGGTTGTGGTTGAACTTGCGAAATCCAGACTGATCCAAACTGCAGTGCTATTGCATCCATCATTTGTCTCCCTGGATGACATCAAGGGTGTTGATATTCCAATTGCTATACTTGGAGCCGAGGTAGACCAAGTTTCTCCTCCAGAGCTTGTGAAACAATTTGAACAAGTCCTAGCTGCTAAATCTGGGGTTGCCAGTTTTGTTAAAATATTTCCCAAAGTTTCACACGGTTGGGCTGTGAGATATAACACTGAAGATGCAGAAACCGTAAAGGTGGCAGAAGAGGCCCACCAGGACTTGCTGGACTGGCTTGCTAAACATCATAAGTGA

>Glyma.07g256100.2 sequence-type=CDS polypeptide=Glyma.07g256100.2.p locus=Glyma.07g256100 ID=Glyma.07g256100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAAGCTTGCTGACAAAGTTGGGGCTGCTGGGTATTATGTAGTTGTTCCTGACCTCTTGGATGGCGAACCCTTTAATCCTCAGAATTCGGACAGGCCCTTTCCTGCTTGGATAAAAGATCATGGACCAGTGGAGAAAGGTGCTGAAGCTACAAAACCCATAATTGAAGCCTTAAAAAGTAAAGGTGTTTCAGCTATTGCAGCTGTTGGTTTTTGTTGGGGTGCAAAGGTTGTGGTTGAACTTGCGAAATCCAGACTGATCCAAACTGCAGTGCTATTGCATCCATCATTTGTCTCCCTGGATGACATCAAGGGTGTTGATATTCCAATTGCTATACTTGGAGCCGAGGTAGACCAAGTTTCTCCTCCAGAGCTTGTGAAACAATTTGAACAAGTCCTAGCTGCTAAATCTGGGGTTGCCAGTTTTGTTAAAATATTTCCCAAAGTTTCACACGGTTGGGCTGTGAGATATAACACTGAAGATGCAGAAACCGTAAAGGTGGCAGAAGAGGCCCACCAGGACTTGCTGGACTGGCTTGCTAAACATCATAAGTGA
Predicted protein sequences of Glyma.07g256100
>Glyma.07g256100.1.p sequence-type=predicted peptide transcript=Glyma.07g256100.1 locus=Glyma.07g256100 ID=Glyma.07g256100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGPQCCSNPPSLNPGGGVGHVDKVGGVDSYFTGSPHSKLAVLMLSDVFGYEAPNLRKLADKVGAAGYYVVVPDLLDGEPFNPQNSDRPFPAWIKDHGPVEKGAEATKPIIEALKSKGVSAIAAVGFCWGAKVVVELAKSRLIQTAVLLHPSFVSLDDIKGVDIPIAILGAEVDQVSPPELVKQFEQVLAAKSGVASFVKIFPKVSHGWAVRYNTEDAETVKVAEEAHQDLLDWLAKHHK*

>Glyma.07g256100.2.p sequence-type=predicted peptide transcript=Glyma.07g256100.2 locus=Glyma.07g256100 ID=Glyma.07g256100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKLADKVGAAGYYVVVPDLLDGEPFNPQNSDRPFPAWIKDHGPVEKGAEATKPIIEALKSKGVSAIAAVGFCWGAKVVVELAKSRLIQTAVLLHPSFVSLDDIKGVDIPIAILGAEVDQVSPPELVKQFEQVLAAKSGVASFVKIFPKVSHGWAVRYNTEDAETVKVAEEAHQDLLDWLAKHHK*






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