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Report for Sequence Feature Glyma.07g255000

Feature Type:gene_model
Chromosome:Gm07
Start:43148749
stop:43150263
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g255000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31710.1AT Copper amine oxidase family protein JGI N/AIEA
GO:0009308GO-bp amine metabolic process EnsemblGenomesN/AIEA
GO:0009308GO-bp amine metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0008131GO-mf primary amine oxidase activity EnsemblGenomesN/AIEA
GO:0008131GO-mf primary amine oxidase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0048038GO-mf quinone binding EnsemblGenomesN/AIEA
GO:0048038GO-mf quinone binding JGI N/AIEA
PTHR10638Panther COPPER AMINE OXIDASE JGI N/AIEA
PTHR10638:SF12Panther JGI N/AIEA
PF01179PFAM Copper amine oxidase, enzyme domain JGI N/AIEA
GN7V-61151SoyCyc9-rxn primary-amine oxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g255000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g255000
ParalogEvidenceComments
Glyma.17g019300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g255000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g38480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g255000
>Glyma.07g255000.1 sequence-type=CDS polypeptide=Glyma.07g255000.1.p locus=Glyma.07g255000 ID=Glyma.07g255000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCGTCACACAGAAACAGGCATTCCCAATGAATCGTTCGCCGAAACTAGAATGGAAGTGAACTTAGTGCTAAGAACAGTTGTTACTGTGGGCAACTACGACAATTGGGAGTTTAAAACAAGTGCCTCAATCAAGCCCTCGGAAATATTGCTCTCTCGGGTATATTGGAAATTAAGGGAGTGGACATTAAGCACAAGAGTGAGATCAAGAGCGATCGACATGGAACCTTGGTGTCAGCAAACAGCATTGGTGTTTACCACGACCACTTCTACATTTACCATCTCTTTTGAGAAGACAAGTTTGAAGACAGTAAGAGTGACAGATGGAAGTTCGAAGAGAAAAAGCTATTGGACAACTGAGCCTAACAAGAAAACCTCCGTTGGATCACAAATACGTGGCGCTTTTACCAACTTCAATGTTTGGGTCACTCCATACAATAGGACTGAGGACCATGGAGATGATACTTTGGCCGTTTGGACCAAAAAGAATAGAGACATTAACAACAAGGACATTGTGCTGTGGCACGTTGTGGGAATTCATCATGTTCCAGCACAAGAAAACTTCCCCATAATGCCATTATTGAGCACTGCATTCGAGCTCAGGCCAACCAATTTCTTCGAGAGGAATCCGGTTCTTAAAACCCTTTCTCCCAAGGATGTGCAATGGCCCGGTTGCCCCAAGTGA
Predicted protein sequences of Glyma.07g255000
>Glyma.07g255000.1.p sequence-type=predicted peptide transcript=Glyma.07g255000.1 locus=Glyma.07g255000 ID=Glyma.07g255000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRHTETGIPNESFAETRMEVNLVLRTVVTVGNYDNWEFKTSASIKPSEILLSRVYWKLREWTLSTRVRSRAIDMEPWCQQTALVFTTTTSTFTISFEKTSLKTVRVTDGSSKRKSYWTTEPNKKTSVGSQIRGAFTNFNVWVTPYNRTEDHGDDTLAVWTKKNRDINNKDIVLWHVVGIHHVPAQENFPIMPLLSTAFELRPTNFFERNPVLKTLSPKDVQWPGCPK*






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