SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.07g254900

Feature Type:gene_model
Chromosome:Gm07
Start:43146580
stop:43148010
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g254900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15490.3AT UDP-glycosyltransferase 73B4 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0043231GO-cc intracellular membrane-bounded organelle EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups JGI N/AIEA
GO:0080043GO-mf quercetin 3-O-glucosyltransferase activity EnsemblGenomesN/AIEA
GO:0080044GO-mf quercetin 7-O-glucosyltransferase activity EnsemblGenomesN/AIEA
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI N/AIEA
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI N/AIEA
PTHR11926:SF15Panther JGI N/AIEA
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI N/AIEA
PWY-116SoyCyc9 coniferin metabolism Plant Metabolic Network ISS
PWY-5176SoyCyc9 coumarin biosynthesis (via 2-coumarate) Plant Metabolic Network ISS
PWY-5968SoyCyc9 cinnamate esters biosynthesis Plant Metabolic Network ISS
PWY-6624SoyCyc9 salicylate glucosides biosynthesis III Plant Metabolic Network ISS
PWY-6762SoyCyc9 salicylate glucosides biosynthesis IV Plant Metabolic Network ISS
PWY-7186SoyCyc9 superpathway of scopolin and esculin biosynthesis Plant Metabolic Network ISS
PWY4FS-10SoyCyc9 scopolin biosynthesis Plant Metabolic Network ISS
GN7V-42717SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Proteins Associated with Glyma.07g254900
LocusGene SymbolProtein Name
SG-1-LIKE putative UDP-glucosyltransferase

Expression Patterns of Glyma.07g254900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g254900
ParalogEvidenceComments
Glyma.17g019400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g254900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g38470 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g254900
>Glyma.07g254900.1 sequence-type=CDS polypeptide=Glyma.07g254900.1.p locus=Glyma.07g254900 ID=Glyma.07g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCCACTCAAACTCTACTTCATTCATTACCCAACAGCAGGTCACATGATCCCTCTCTGCGACATAGCCACGCTCTTCGCCTCTCGCGGCCACCACGCCACTATCATCACCACCCCCGTCAACGCCCAAATCATTCGCAAATCCATCCCCTCCCTCCGCCTCCACACCGTTCCCTTCCCCTCCCAAGAACTGGGCCTCCCCGACGGCATCGAAAGCCTCTCCTCCCTCATTGACGACATCCGCCACTTCCCCAAGGTCTACCATGCCATCTCCATGCTCCAACCCCCCATCGAGCAATTCGTGGAGCAGCACCCACCTGATTGCATCGTCGCCGACTTCCTCTTCCCCTGGGTCCATGACTTGGCCAACAAGCTTAACATTCCCAGCGTTGCCTTCAACGGCTTCTCCCTCTTCGCAATCTGCGCCATACGCGCCGTCAACCTTGAATCTTCCGATTCTTTTCACATTCCCAGTATCCCTCACCCCATCTCCCTCAACGCAACACCGCCCAAGGAGTTAACCCAATACCTGAAACTGATGCTGGAGTCACAGCTCAAGAGCCACGCTATCATCATCAACAACTTCGCCGAGCTTGACGGACAAGACTACATCCGCCACTACGAGAAAACCACTGGCCACAAGACTTGGCATCTTGGCCCGGCCTCTCTTATAAGCTGCAGGACCGCTCAAGAGAAAGCAGAGAGGGGCATGAAGAGCGCGGTGAGTATGCAGGACTGTGTGAGTTGGCTTGACTCGAAGCGAGTCAACTCGGTGCTGTACATATGCTTTGGAAGCCTTTGCCATTTCCCGGACGAACAGCTATACGAGATAGCATGCGGGATGGAAGCATCGGGTCATGAATTCATATGGGTGGTTCCGGAGAAGAAAGGGAAGGAGCACGAGAGCGAGGAAGAGAAGGAGAAGTGGCTTCCAAGGGGGTTTGAAGAGAGGAACGCAGAGAAGGGGATGATTATCAGGGGGTGGGCCCCGCAGGTGATTATTCTTGGCCACCCCGCGGTGGGCGCGTTCATCACGCACTGCGGGTGGAACTCCACGGTGGAGGCGGTGAGCGAGGGGGTTCCGATGCTGACGTGGCCGGTGCATGGAGAACAGTTCTACAATGAGAAGCTGATAACTGAGGTAAGGGGGATCGGGGTGGAGGTTGGCGCAGCGGAGTGGACCACCACTGGCTTCGGAGAGAGATACCAGATGCTGACCAGAGATAGCATCCAGAAGGCTGTGAGGCGCTTGATGGACGGTGCTGATCAAGCTCTAGAAATCAGACGCCGTGCAAAACACTTTCAGGAAAAGGCCAAACAAGCTGTTCGAGTAGGAGGTTCATCTCACAATAATTTAACGGCCCTGATTCATGATCTTATCCGACTAAGGGATGCCAAGCTTCCATCTCCAGATACCCCAAAAGGCTAA
Predicted protein sequences of Glyma.07g254900
>Glyma.07g254900.1.p sequence-type=predicted peptide transcript=Glyma.07g254900.1 locus=Glyma.07g254900 ID=Glyma.07g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPLKLYFIHYPTAGHMIPLCDIATLFASRGHHATIITTPVNAQIIRKSIPSLRLHTVPFPSQELGLPDGIESLSSLIDDIRHFPKVYHAISMLQPPIEQFVEQHPPDCIVADFLFPWVHDLANKLNIPSVAFNGFSLFAICAIRAVNLESSDSFHIPSIPHPISLNATPPKELTQYLKLMLESQLKSHAIIINNFAELDGQDYIRHYEKTTGHKTWHLGPASLISCRTAQEKAERGMKSAVSMQDCVSWLDSKRVNSVLYICFGSLCHFPDEQLYEIACGMEASGHEFIWVVPEKKGKEHESEEEKEKWLPRGFEERNAEKGMIIRGWAPQVIILGHPAVGAFITHCGWNSTVEAVSEGVPMLTWPVHGEQFYNEKLITEVRGIGVEVGAAEWTTTGFGERYQMLTRDSIQKAVRRLMDGADQALEIRRRAKHFQEKAKQAVRVGGSSHNNLTALIHDLIRLRDAKLPSPDTPKG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo