SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G15490.3 | AT | UDP-glycosyltransferase 73B4 | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0043231 | GO-cc | intracellular membrane-bounded organelle | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | JGI | N/A | IEA |
| GO:0080043 | GO-mf | quercetin 3-O-glucosyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0080044 | GO-mf | quercetin 7-O-glucosyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1192 | KOG | UDP-glucuronosyl and UDP-glucosyl transferase | JGI | N/A | IEA |
| PTHR11926 | Panther | GLUCOSYL/GLUCURONOSYL TRANSFERASES | JGI | N/A | IEA |
| PTHR11926:SF15 | Panther | JGI | N/A | IEA | |
| PF00201 | PFAM | UDP-glucoronosyl and UDP-glucosyl transferase | JGI | N/A | IEA |
| PWY-116 | SoyCyc9 | coniferin metabolism | Plant Metabolic Network | ISS | |
| PWY-5176 | SoyCyc9 | coumarin biosynthesis (via 2-coumarate) | Plant Metabolic Network | ISS | |
| PWY-5968 | SoyCyc9 | cinnamate esters biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6624 | SoyCyc9 | salicylate glucosides biosynthesis III | Plant Metabolic Network | ISS | |
| PWY-6762 | SoyCyc9 | salicylate glucosides biosynthesis IV | Plant Metabolic Network | ISS | |
| PWY-7186 | SoyCyc9 | superpathway of scopolin and esculin biosynthesis | Plant Metabolic Network | ISS | |
| PWY4FS-10 | SoyCyc9 | scopolin biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-42717 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SG-1-LIKE | putative UDP-glucosyltransferase |
|
Glyma.07g254900 not represented in the dataset |
Glyma.07g254900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g019400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g38470 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g254900.1 sequence-type=CDS polypeptide=Glyma.07g254900.1.p locus=Glyma.07g254900 ID=Glyma.07g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGCCACTCAAACTCTACTTCATTCATTACCCAACAGCAGGTCACATGATCCCTCTCTGCGACATAGCCACGCTCTTCGCCTCTCGCGGCCACCACGCCACTATCATCACCACCCCCGTCAACGCCCAAATCATTCGCAAATCCATCCCCTCCCTCCGCCTCCACACCGTTCCCTTCCCCTCCCAAGAACTGGGCCTCCCCGACGGCATCGAAAGCCTCTCCTCCCTCATTGACGACATCCGCCACTTCCCCAAGGTCTACCATGCCATCTCCATGCTCCAACCCCCCATCGAGCAATTCGTGGAGCAGCACCCACCTGATTGCATCGTCGCCGACTTCCTCTTCCCCTGGGTCCATGACTTGGCCAACAAGCTTAACATTCCCAGCGTTGCCTTCAACGGCTTCTCCCTCTTCGCAATCTGCGCCATACGCGCCGTCAACCTTGAATCTTCCGATTCTTTTCACATTCCCAGTATCCCTCACCCCATCTCCCTCAACGCAACACCGCCCAAGGAGTTAACCCAATACCTGAAACTGATGCTGGAGTCACAGCTCAAGAGCCACGCTATCATCATCAACAACTTCGCCGAGCTTGACGGACAAGACTACATCCGCCACTACGAGAAAACCACTGGCCACAAGACTTGGCATCTTGGCCCGGCCTCTCTTATAAGCTGCAGGACCGCTCAAGAGAAAGCAGAGAGGGGCATGAAGAGCGCGGTGAGTATGCAGGACTGTGTGAGTTGGCTTGACTCGAAGCGAGTCAACTCGGTGCTGTACATATGCTTTGGAAGCCTTTGCCATTTCCCGGACGAACAGCTATACGAGATAGCATGCGGGATGGAAGCATCGGGTCATGAATTCATATGGGTGGTTCCGGAGAAGAAAGGGAAGGAGCACGAGAGCGAGGAAGAGAAGGAGAAGTGGCTTCCAAGGGGGTTTGAAGAGAGGAACGCAGAGAAGGGGATGATTATCAGGGGGTGGGCCCCGCAGGTGATTATTCTTGGCCACCCCGCGGTGGGCGCGTTCATCACGCACTGCGGGTGGAACTCCACGGTGGAGGCGGTGAGCGAGGGGGTTCCGATGCTGACGTGGCCGGTGCATGGAGAACAGTTCTACAATGAGAAGCTGATAACTGAGGTAAGGGGGATCGGGGTGGAGGTTGGCGCAGCGGAGTGGACCACCACTGGCTTCGGAGAGAGATACCAGATGCTGACCAGAGATAGCATCCAGAAGGCTGTGAGGCGCTTGATGGACGGTGCTGATCAAGCTCTAGAAATCAGACGCCGTGCAAAACACTTTCAGGAAAAGGCCAAACAAGCTGTTCGAGTAGGAGGTTCATCTCACAATAATTTAACGGCCCTGATTCATGATCTTATCCGACTAAGGGATGCCAAGCTTCCATCTCCAGATACCCCAAAAGGCTAA
>Glyma.07g254900.1.p sequence-type=predicted peptide transcript=Glyma.07g254900.1 locus=Glyma.07g254900 ID=Glyma.07g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEPLKLYFIHYPTAGHMIPLCDIATLFASRGHHATIITTPVNAQIIRKSIPSLRLHTVPFPSQELGLPDGIESLSSLIDDIRHFPKVYHAISMLQPPIEQFVEQHPPDCIVADFLFPWVHDLANKLNIPSVAFNGFSLFAICAIRAVNLESSDSFHIPSIPHPISLNATPPKELTQYLKLMLESQLKSHAIIINNFAELDGQDYIRHYEKTTGHKTWHLGPASLISCRTAQEKAERGMKSAVSMQDCVSWLDSKRVNSVLYICFGSLCHFPDEQLYEIACGMEASGHEFIWVVPEKKGKEHESEEEKEKWLPRGFEERNAEKGMIIRGWAPQVIILGHPAVGAFITHCGWNSTVEAVSEGVPMLTWPVHGEQFYNEKLITEVRGIGVEVGAAEWTTTGFGERYQMLTRDSIQKAVRRLMDGADQALEIRRRAKHFQEKAKQAVRVGGSSHNNLTALIHDLIRLRDAKLPSPDTPKG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
