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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18900.1 | AT | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | EnsemblGenomes | N/A | IEA |
| GO:0016706 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | JGI | N/A | IEA |
| GO:0031418 | GO-mf | L-ascorbic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG1591 | KOG | Prolyl 4-hydroxylase alpha subunit | JGI | N/A | IEA |
| PTHR10869 | Panther | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT | JGI | N/A | IEA |
| PF01549 | PFAM | ShK domain-like | JGI | N/A | IEA |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | N/A | IEA |
| GN7V-62696 | SoyCyc9-rxn | procollagen-proline dioxygenase | Plant Metabolic Network | ISS |
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Glyma.07g253200 not represented in the dataset |
Glyma.07g253200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g021200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g38330 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g253200.1 sequence-type=CDS polypeptide=Glyma.07g253200.1.p locus=Glyma.07g253200 ID=Glyma.07g253200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATAGGGTTTGGTTTCTACTATTCCTTCTGCTGATCTCGAAATGCGATCATGTGTGGAGCTCTTACGCGGGTTCCGCTAGCTCCGTCATCAACCCTTCCAAGGTCAAACAGATTTCCTGGAAGCCAAGAGCTTTCGTTTATGAAGGTTTCCTCACGGATTTGGAATGCGACCACTTGATCTCTCTAGCGAAATCGGAGCTTAAGAGATCTGCCGTAGCGGATAATCTCTCTGGAGAGAGCCAGCTAAGTGATGTTCGAACAAGCTCTGGAATGTTCATTTCCAAGAACAAGGATCCTATTGTTGCTGGTATTGAGGACAAGATTTCGTCATGGACCTTTCTTCCAAAAGAAAATGGGGAAGATATACAAGTATTGAGATATGAGCATGGCCAGAAATATGACCCGCATTATGATTACTTCACTGATAAAGTTAACATTGCTCGGGGTGGACATCGCATCGCGACTGTTCTCATGTATCTCACTGATGTAGCCAAAGGCGGTGAAACTGTCTTCCCTTCTGCAGAGGAACCTCCACGTCGCAGAGGTGCTGAAACAAGCAGTGATCTTTCTGAATGTGCCAAGAAAGGAATAGCAGTGAAACCACGTAGAGGGGACGCACTTCTTTTCTTCAGTCTTCACACAAATGCTACCCCAGACACTAGCAGTCTCCATGCTGGATGCCCTGTTATCGAAGGTGAGAAATGGTCCGCAACAAAGTGGATTCATGTAGACTCGTTTGATAAGACTGTGGGAGCTGGAGGTGATTGTTCTGATAATCATGTAAGCTGTGAGAGATGGGCTTCACTTGGAGAATGCACTAAAAATCCTGAGTATATGATTGGATCTTCAGACATTCCCGGCTATTGTAGGAAAAGCTGCAAGGCGTGTTAG
>Glyma.07g253200.1.p sequence-type=predicted peptide transcript=Glyma.07g253200.1 locus=Glyma.07g253200 ID=Glyma.07g253200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNRVWFLLFLLLISKCDHVWSSYAGSASSVINPSKVKQISWKPRAFVYEGFLTDLECDHLISLAKSELKRSAVADNLSGESQLSDVRTSSGMFISKNKDPIVAGIEDKISSWTFLPKENGEDIQVLRYEHGQKYDPHYDYFTDKVNIARGGHRIATVLMYLTDVAKGGETVFPSAEEPPRRRGAETSSDLSECAKKGIAVKPRRGDALLFFSLHTNATPDTSSLHAGCPVIEGEKWSATKWIHVDSFDKTVGAGGDCSDNHVSCERWASLGECTKNPEYMIGSSDIPGYCRKSCKAC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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