Glyma.07g250900

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Report for Sequence Feature Glyma.07g250900

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42887216
stop:	42890710
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g250900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18650.1	AT	CHY-type/CTCHY-type/RING-type Zinc finger protein	JGI	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG1940	KOG	Zn-finger protein	JGI	N/A	IEA
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI	N/A	IEA
PTHR21319	Panther	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	JGI	N/A	IEA
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI	N/A	IEA
PF05495	PFAM	CHY zinc finger	JGI	N/A	IEA

Expression Patterns of Glyma.07g250900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g250900 not represented in the dataset	Glyma.07g250900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g250900

Paralog	Evidence	Comments
Glyma.17g023400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g250900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g38070	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g250900

Limit To All Plant Sequences

>Glyma.07g250900.2 sequence-type=transcript locus=Glyma.07g250900 ID=Glyma.07g250900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAATATTCTTTTCTCTCCTGCTCAAGTCACTGCGCCTTATCTCATCCCAAGTGGTCATTCTCTATTACTGCTGTCTGCTTAAGATATTTTTATATTGCATTAAAAAAAGAGGGTAAGAGAGAGTGTGGTCCTTTTAAGTCTTTCTCTTTTTGGGATCACGCCACATATCTTCCCAAATCAGGAAACTCTTTCTCTTCTTCCGTTTCCTAGTCTCACACCCAAACCTCATGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAATCATTACCGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGACGCTGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGACCAGATTCTTGGGTTCAAGAAGGGAAAACTGTCAGCAGAAAATTAAAGTTAGCACCCTGTTATTATTATAGAGGGCTATTGAATTAATTGAGCATCAAAAGTGATTGGTGTATTGTGTCCTAGATAGTTTTCTTAGGTTATTCTTCCTCCAACATATGGAGTGGGATTGTTGTCTCTTGGTTATTGGGCTGGTATGAACATCTTTATACTGTAACAGAGGGAAAACATTTTTCCCGGTCATGAATTGCTGGTAATAGTGATGTATTTGATACTGGGTGATTGATTGCATTGTCAGCCATTGTGGTTCTCTATAATTTGGTCGGGATTATTTGATCCTTGTAGTTTTTCTCGCACATTGGAATAAACTGTGATCGTTAGTTTTGATCATTCTATTCCCAGCCATTATTTTACAAAAGTGGAAATAGTCATCTTTTTGTGGTTAAATTGAC

Coding sequences of Glyma.07g250900

Limit To All Plant Sequences

>Glyma.07g250900.1 sequence-type=CDS polypeptide=Glyma.07g250900.1.p locus=Glyma.07g250900 ID=Glyma.07g250900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAATCATTACCGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGACGCTGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGTGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGA

>Glyma.07g250900.2 sequence-type=CDS polypeptide=Glyma.07g250900.2.p locus=Glyma.07g250900 ID=Glyma.07g250900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGA

Predicted protein sequences of Glyma.07g250900

Limit To All Plant Sequences

>Glyma.07g250900.1.p sequence-type=predicted peptide transcript=Glyma.07g250900.1 locus=Glyma.07g250900 ID=Glyma.07g250900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSVNERLDFGKMGYGCNHYRRRCRIRAPCCNEIYSCRHCHNDAASLLKNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYVEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPEDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRAVAPPVLPQ*

>Glyma.07g250900.2.p sequence-type=predicted peptide transcript=Glyma.07g250900.2 locus=Glyma.07g250900 ID=Glyma.07g250900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLNKLFVQFVTLSNLLLKFAQTVASKWENTSATSANSSMMMLRKNNFTVMIVGSAGSCYAIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYVEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPEDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRAVAPPVLPQ*

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