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Report for Sequence Feature Glyma.07g248200

Feature Type:gene_model
Chromosome:Gm07
Start:42658521
stop:42659220
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g248200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G22580.1AT Exostosin family protein JGI N/AIEA
GO:0006486GO-bp protein glycosylation EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI N/AIEA
PF03016PFAM Exostosin family JGI N/AIEA
PWY-5936SoyCyc9 xyloglucan biosynthesis Plant Metabolic Network ISS
GN7V-65464SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.07g248200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g248200 not represented in the dataset
Glyma.07g248200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g248200
ParalogEvidenceComments
Glyma.17g025900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g248200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g37751 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g248200
>Glyma.07g248200.1 sequence-type=CDS polypeptide=Glyma.07g248200.1.p locus=Glyma.07g248200 ID=Glyma.07g248200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTCGCGTCCGCCGCAGCATAAGGAGCGAGTGCGAGAACGCCACCTCCTCCTCGGATTCCTCGTACGACACGCTGTGCGAGATTGTGGATTGCTCCAACGGGGTCTGCGAGCACGACCCTGTTCGGTTCATGCGGCCAATGCTTTCGGCTAGTTTCTGCTTGCAGCCTCCCGGGGACACGACCACGCGCCGGTCCACGTTCGACGCGGTACTCGCGGGGTGCATACCGGTTTTCTTCGAGGAGCTTTCGGCGAAGGCTCAGTATGGGTGGCATTTGCCGGAGGCGGAGTTTGAGGAGCTGTCTGTGTTTATACCGAAGGAGGAGGTGGTGTTCAGAGGGATGAGGATTTTGGATGTGTTGCAACAGATACCGAGAGGTAGGGTTAGGAGAATGAGGGAGAGGGTTTTGGAGTTGATGCCGAGTGTCTTTTACAGGAAGCATAATAGTTCCCCGGGTCTCAAAACTAAGAAGGATGCGGTTGATTTGGCCATTGATGGTACATTGGATAAGATTTGA
Predicted protein sequences of Glyma.07g248200
>Glyma.07g248200.1.p sequence-type=predicted peptide transcript=Glyma.07g248200.1 locus=Glyma.07g248200 ID=Glyma.07g248200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPRVRRSIRSECENATSSSDSSYDTLCEIVDCSNGVCEHDPVRFMRPMLSASFCLQPPGDTTTRRSTFDAVLAGCIPVFFEELSAKAQYGWHLPEAEFEELSVFIPKEEVVFRGMRILDVLQQIPRGRVRRMRERVLELMPSVFYRKHNSSPGLKTKKDAVDLAIDGTLDKI*






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