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Report for Sequence Feature Glyma.07g246600

Feature Type:gene_model
Chromosome:Gm07
Start:42559018
stop:42562109
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g246600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62830.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0042732GO-bp D-xylose metabolic process EnsemblGenomesN/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0045226GO-bp extracellular polysaccharide biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005802GO-cc trans-Golgi network EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0008831GO-mf dTDP-4-dehydrorhamnose reductase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0048040GO-mf UDP-glucuronate decarboxylase activity EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
GO:0070403GO-mf NAD+ binding EnsemblGenomesN/AIEA
KOG1429 KOG dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF35Panther UDP-GLUCURONIC ACID DECARBOXYLASE 1 JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-4821SoyCyc9 UDP-α-D-xylose biosynthesis Plant Metabolic Network ISS
GN7V-54157SoyCyc9-rxn UDP-glucuronate decarboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g246600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g246600
ParalogEvidenceComments
Glyma.17g027300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g246600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g37610 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g246600
>Glyma.07g246600.1 sequence-type=CDS polypeptide=Glyma.07g246600.1.p locus=Glyma.07g246600 ID=Glyma.07g246600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCATAGAACACAAACACCAGATCTCCCTAACCGCACCTCAGATTCACCGCCAAAATCAACGAACCGCATCGGTTACATGTTTCGCGAGCGCGTGCCGTTCCTGCTCGTGGGCGTGGCCATTGCCAGCGTCTTCTTCCAGCTCCTCCCTTCTCGATCCATAGTGTCGGCTCCTCACGACTCGTTCCTCGAGACCGAGTTGGCTCTGCCGACTCGGCGGGTGCTGTTGGAAGGGTCGACGACTCAGGAGAAGAAGGGAAGGGTCCCTCTCGGGGTGAGAGGCAAGAAGCAGAAGAGGGTCCTGGTGACCGGTGGAGCCGGTTTCGTTGGAAGCCATCTGGTGGACCGTCTGATTGAAAGGGGCGACAGCGTGATCGTGGTAGATAACTTGTTCACGGGAAGGAAAGAGAACGTGCTGCACCACATGGGGAACCCAAACTTCGAACTCATTCGCCACGACGTCGTTGAACCCATCCTTCTCGAGGTTGACCAGATCTACCACTTGGCTTGCCCCGCTTCTCCTGTCCATTACAAGTTCAACCCCGTCAAGACAATCAAGACAAATGTGGTGGGCACGCTCAACATGTTGGGATTGGCAAAGAGAGTGGGTGCTCGTTTTCTGATTAGTAGCACCAGTGAGGTTTACGGTGATCCACTTCAGCACCCTCAGGCTGAGACCTACTGGGGAAACGTTAATCCCATTGGTGTAAGGAGCTGTTATGACGAGGGAAAGCGCACTGCAGAGACTTTGGCAATGGATTATCACAGAGGTGCTGGTATTGAGGTAAGGATTGCTCGAATCTTCAACACTTATGGACCGAGAATGTGCCTTGATGATGGGCGTGTAGTCAGTAACTTCGTCGCTCAGGCTTTGAGGAAGGAGCCATTGACTGTTTATGGCGATGGAAAGCAGACACGAAGCTTTCAATATGTCTCAGACCTGGTAGAAGGCTTAATGCGGCTGATGGAAGGTGAGCATGTTGGTCCTTTCAATCTCGGCAACCCTGGTGAATTCACCATGCTTGAACTGGCTCAGGTGGTGCAAGAGACTATAGACCCAAATGCGAAGATAGAGTTTAGACCTAACACAGAAGATGACCCACATAAGAGGAAGCCCGACATCTCCAAAGCGAAGGAGCTTCTTGGTTGGCAGCCCACTGTGTCCCTCCGTGAGGGACTTCCTCTGATGGTCTCTGATTTCCGGCAAAGATTGTTTGGTGACTCAAAACTCACTGGCGGCAAAGGTGCATCCGAAGCAGCATAG
Predicted protein sequences of Glyma.07g246600
>Glyma.07g246600.1.p sequence-type=predicted peptide transcript=Glyma.07g246600.1 locus=Glyma.07g246600 ID=Glyma.07g246600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIHRTQTPDLPNRTSDSPPKSTNRIGYMFRERVPFLLVGVAIASVFFQLLPSRSIVSAPHDSFLETELALPTRRVLLEGSTTQEKKGRVPLGVRGKKQKRVLVTGGAGFVGSHLVDRLIERGDSVIVVDNLFTGRKENVLHHMGNPNFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLISSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGIEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKELLGWQPTVSLREGLPLMVSDFRQRLFGDSKLTGGKGASEAA*






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