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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06850.1 | AT | 2-oxoacid dehydrogenases acyltransferase family protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | JGI | N/A | IEA |
| KOG0558 | KOG | Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) | JGI | N/A | IEA |
| PTHR23151 | Panther | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | JGI | N/A | IEA |
| PTHR23151:SF11 | Panther | JGI | N/A | IEA | |
| PF00198 | PFAM | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | JGI | N/A | IEA |
| PF00364 | PFAM | Biotin-requiring enzyme | JGI | N/A | IEA |
| PF02817 | PFAM | e3 binding domain | JGI | N/A | IEA |
| ILEUDEG-PWY | SoyCyc9 | L-isoleucine degradation I | Plant Metabolic Network | ISS | |
| LEU-DEG2-PWY | SoyCyc9 | L-leucine degradation I | Plant Metabolic Network | ISS | |
| PWY-5046 | SoyCyc9 | 2-oxoisovalerate decarboxylation to isobutanoyl-CoA | Plant Metabolic Network | ISS | |
| VALDEG-PWY | SoyCyc9 | L-valine degradation I | Plant Metabolic Network | ISS | |
| GN7V-45148 | SoyCyc9-rxn | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)| Plant Metabolic Network | ISS |
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Glyma.07g246000 not represented in the dataset |
Glyma.07g246000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g028000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g37540 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g246000.1 sequence-type=CDS polypeptide=Glyma.07g246000.1.p locus=Glyma.07g246000 ID=Glyma.07g246000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTGAGCAGCCGCATATGGCAGAGGAGAGCTTTGATCTCCGCCCGGACCTTATTTTCTGCCTCCGCTTCTCATTCCTCATCATCTTCCCCTGCGATCCCGTTTCGCTTCTCCAAAGCTAATGCTTCTTCTTCTTCACATCTGATTTTCAATTTTGCACGTGTGAACATATATTGGTTTTCTACTCAACCCGCCCTTGAGCTTCCCGCAAGCAAGATTGTGGACGTGCCATTGGCACAAACGGGTGAAGGCATCGCAGAATGTGAGCTTCTCAAATGGTATGTCCAAGAGGGGGATTATGTTGAAGACTTTCAACCACTTTGCGAAGTTCAAAGTGATAAAGCTACCATAGAAATTACTAGTCGTTACAAAGGAAAAATTTCTAGCTTTCTCTACGTTCCTGGTGATATTGTGAAGGTTGGAGAAACTCTATTAAAGATATTAGTTGACGAGTCTGCATTTCCTTCAGGGACTCCTTGTGATTCTGAAAATGCAAAGTCACCTGATTCTGATCAGACATTAGTAAATGAGTCTGTGCTTACTACTGTAGTTGACGATTCTGACAATGCCAAGTTGATAGATTCTGATCCTGGAAAAGGGAGACAAACTGGAGTTCTATCAACACCTGCTATAAGAAGTCTAGCAAAGCAACATGGTATAGATATAACTGAAGTCTGTGGAACTGGAAAAGATGGAAGGGTTTTGAAAGAAGACGTGCTCAATTTTGCTGTCAAGAAAGGAATCATTAAAAATCCATCTACTGTCTTGCATTCTGATTCTGGAGAACAGCTTCAGGGAGCTGAAGGATACAACTGCAATGTCGCAACTAAATTTTATAGGTCGTCTGAGGACAGGACACTTCCCCTTAGGGGATTCCAAAGAGCAATGGTAAAGTCAATGTCCCTGGCTGCTAAAGTCCCACATTTTCATTATGTGGATGAGATAAATTGTGATGCCCTTGTGGAGCTTAAAACATCTTTTCAGAAAAATAATCCTTATCCAGATGTTAAGTACACTTTCCTTCCAATATTAATCAAATCACTATCAATGGCCCTCAGTAAGTACCCCTTTATGAACAGTTGCTTCAAAGAGGATGCATTGGAGGTTGTCCTCAAAGGTTCACACAACGTTGGAATTGCCATGGCGACACCACATGGTTTAGTTGTGCCAAACATAAAAAATGTTCAGTCTCTTTCCATAATGGAGATAACCAAAGATCTGGCAAGGTTACAACAATTGGCTTCAGATAACAAGTTAACTTCTGAGGAAATATATGGTGGTACTATCACTTTGAGCAACATTGGAGCAATTGGTGGAAAGTTTGGTTCCCCACTTATCAATCTGCCTGAAGTCTCTATTATTGCCATTGGTAGAATTCAGATAGTTCCACGGTTTGCTGATAATGGAAATGTGTATCCTGCATCACTCATGAATGTTAATATTGGTGCAGATCACAGAGTCTTGGACGGAGCAACCGTTGCAAGATTTTGCAACGAGTGGAAGCAATTAATTGAAAATCCCGAGCTCCTCACGCTGCATTTGAAATGA
>Glyma.07g246000.1.p sequence-type=predicted peptide transcript=Glyma.07g246000.1 locus=Glyma.07g246000 ID=Glyma.07g246000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLSSRIWQRRALISARTLFSASASHSSSSSPAIPFRFSKANASSSSHLIFNFARVNIYWFSTQPALELPASKIVDVPLAQTGEGIAECELLKWYVQEGDYVEDFQPLCEVQSDKATIEITSRYKGKISSFLYVPGDIVKVGETLLKILVDESAFPSGTPCDSENAKSPDSDQTLVNESVLTTVVDDSDNAKLIDSDPGKGRQTGVLSTPAIRSLAKQHGIDITEVCGTGKDGRVLKEDVLNFAVKKGIIKNPSTVLHSDSGEQLQGAEGYNCNVATKFYRSSEDRTLPLRGFQRAMVKSMSLAAKVPHFHYVDEINCDALVELKTSFQKNNPYPDVKYTFLPILIKSLSMALSKYPFMNSCFKEDALEVVLKGSHNVGIAMATPHGLVVPNIKNVQSLSIMEITKDLARLQQLASDNKLTSEEIYGGTITLSNIGAIGGKFGSPLINLPEVSIIAIGRIQIVPRFADNGNVYPASLMNVNIGADHRVLDGATVARFCNEWKQLIENPELLTLHLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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