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Report for Sequence Feature Glyma.07g245700

Feature Type:gene_model
Chromosome:Gm07
Start:42473479
stop:42475653
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g245700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11710.1AT lysyl-tRNA synthetase 1 JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR22594Panther ASPARTYL/LYSYL-TRNA SYNTHETASE JGI N/AIEA
PTHR22594:SF4Panther LYSINE--TRNA LIGASE JGI N/AIEA
PF00152PFAM tRNA synthetases class II (D, K and N) JGI N/AIEA

Expression Patterns of Glyma.07g245700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g245700 not represented in the dataset
Glyma.07g245700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g245700
ParalogEvidenceComments
Glyma.17g028300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g245700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.07g245700
>Glyma.07g245700.1 sequence-type=CDS polypeptide=Glyma.07g245700.1.p locus=Glyma.07g245700 ID=Glyma.07g245700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTCCTCTAGCAAAGTGGCACAGATCCAAACCAGGCCTGACTGAACGTTTTCAATTGTTTGTTAATAAACGTGAACTTTGCTATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAGTATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTCACCATGTTACTGACTGATTCACAGAATATTAAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGA
Predicted protein sequences of Glyma.07g245700
>Glyma.07g245700.1.p sequence-type=predicted peptide transcript=Glyma.07g245700.1 locus=Glyma.07g245700 ID=Glyma.07g245700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSPLAKWHRSKPGLTERFQLFVNKRELCYAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRFTMLLTDSQNIKVLLFPAMKPQD*






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