Report for Sequence Feature Glyma.07g241300
Feature Type: gene_model
Chromosome: Gm07
Start: 42142271
stop: 42144124
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.07g241300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G49400.1 AT
zinc knuckle (CCHC-type) family protein
JGI N/A IEA
GO:0003676 GO-mf
nucleic acid binding
EnsemblGenomes N/A IEA
GO:0008270 GO-mf
zinc ion binding
EnsemblGenomes N/A IEA
PTHR13491 Panther
ZCCHC10 PROTEIN
JGI N/A IEA
Expression Patterns of Glyma.07g241300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.07g241300
Paralog Evidence Comments
Glyma.17g032500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.07g241300 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma07g37020 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.07g241300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.07g241300.2 sequence-type=transcript locus=Glyma.07g241300 ID=Glyma.07g241300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATTTTAATATTTTGAAAAAAATAAGGAAAGCTCATTCAACCCTAATTTTCTTGTTCATATATGGGCTGTACTGATTAAAGAGATCGTGTCCCAATTCCTCAATTCTGAATCGAGTTTCAAAATTAGGGGGAAAAGAAAACTTCGGGTTCAATAACTGTTGAGTGTGCAATTAGTTTTTTGGGAAGTTAGATGCTGTTGAGTTTATTCGTCTGCCACAAAAGGCAAACTTGAGGACATATATAAAACATGTCAAGCAAGAAGGAAGAGAAATCTCAGGCTGCAGCTGAAAGAATCAAGGCTGCAGCCCTGAGTGCTGCTAAAGGCCTTAGTCGTGCCCAGGCTGAAAGGGCGGCTGCTGCGGCTGCCCGAAATGTCAATGCCTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACCGAAAAAGCTGTTAAATTGGGTGAAAGGAAAGACCTCAAGCCTGCAATGTCGGCTGCAGGTGGAGTGGCGCAGTGCCAAAAGTGTTTCCAGAGTGGCCATTGGACATATGAATGCAAGAATGAACGGGTTTACATTTCGAGACCATCCCGGACCCAACAACTTAAAAACCCTAAATTGAGGGTGAATGTGTCTGTGACTTATGATTTGGATGATAACATTCCTGATGCTAAGGTGGAAAAGGCAAAAACAAGTTCCAAAAAAACCAAAAGGAAGCATCGGAAGGACTCTGATTCTGGTAGCGATAGTGAGGATTCTGTTTTTGAGACCGATAGTGGCAGTGGGTCATCATCTGTTACGGGGTCGGATTATTCTTCTGAAAGTAGTTCAGGTTACAGTTCATCTTCTGATTCagaggaggaacggagacggaggagaaagaagaagcagaagagaggaagacgcaagaGGTACAGTTCATCAGAATCAtctgattcagattctgcttcagactctgattctgatGATGAAAGGAGCCGGAGAAAGAAGAGGCATAATCGAAGACACTGAATGAGACTGAAGAATGCCTGGAGCAACAAAGGGGTTGGTGAGTGGGGGGGACATGTTGGATCGTTACCAAGTCCATGTATACAATCATGAAGTTTCAGCAGCTATGTCCACTTGTTTGTGATATCGGTAATGTAGAATAAGCTTTCCTAGATGCAGGGGTTGTGTTTTTGTTTCTTTGATTACTTATCTTGAAGATACTTGCAAGTTAGGTTTAATCTTTAAACAGTTACCTTTTTGGACATGCTCTATGTTGTTTATGAGATGTTTAAGCAGTTGGATGGTTTTTTCATTTGACGCAAGCTTTGAATGCTGTCATACTCATACTCTCATTTGCAACATAATTTCTTGTGTAGTTTTGAGGCTTTCATAGTGCTTTCGTGCATCTATATTACATTGAACCTTCTGAGCTTGAGCTTATTGCTTACATCAGTTGGCATACTATGAGTCATAGTTTGTGGTTTTG
Coding sequences of Glyma.07g241300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.07g241300.1 sequence-type=CDS polypeptide=Glyma.07g241300.1.p locus=Glyma.07g241300 ID=Glyma.07g241300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAGCAAGAAGGAAGAGAAATCTCAGGCTGCAGCTGAAAGAATCAAGGCTGCAGCCCTGAGTGCTGCTAAAGGCCTTAGTCGTGCCCAGGCTGAAAGGGCGGCTGCTGCGGCTGCCCGAAATGTCAATGCCTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACCGAAAAAGCTGTTAAATTGGGTGAAAGGAAAGACCTCAAGCCTGCAATGTCGGCTGCAGGTGGAGTGGCGCAGTGCCAAAAGTGTTTCCAGAGTGGCCATTGGACATATGAATGCAAGAATGAACGGGTTTACATTTCGAGACCATCCCGGACCCAACAACTTAAAAACCCTAAATTGAGGGTGAATGTGTCTGTGACTTATGATTTGGATGATAACATTCCTGATGCTAAGGTGGAAAAGGCAAAAACAAGTTCCAAAAAAACCAAAAGGAAGCATCGGAAGGACTCTGATTCTGGTAGCGATAGTGAGGATTCTGTTTTTGAGACCGATAGTGGCAGTGGGTCATCATCTGTTACGGGGTCGGATTATTCTTCTGAAAGTAGTTCAGGTTACAGTTCATCTTCTGATTCAGAGGAGGAACGGAGACGGAGGAGAAAGAAGAAGCAGAAGAGAGGAAGACGCAAGAGGTACAGTTCATCAGAATCATCTGATTCAGATTCTGCTTCAGACTCTGATTCTGATGATGAAAGGAGCCGGAGAAAGAAGAGGCATAATCGAAGACACTGA
>Glyma.07g241300.2 sequence-type=CDS polypeptide=Glyma.07g241300.2.p locus=Glyma.07g241300 ID=Glyma.07g241300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAGCAAGAAGGAAGAGAAATCTCAGGCTGCAGCTGAAAGAATCAAGGCTGCAGCCCTGAGTGCTGCTAAAGGCCTTAGTCGTGCCCAGGCTGAAAGGGCGGCTGCTGCGGCTGCCCGAAATGTCAATGCCTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACCGAAAAAGCTGTTAAATTGGGTGAAAGGAAAGACCTCAAGCCTGCAATGTCGGCTGCAGGTGGAGTGGCGCAGTGCCAAAAGTGTTTCCAGAGTGGCCATTGGACATATGAATGCAAGAATGAACGGGTTTACATTTCGAGACCATCCCGGACCCAACAACTTAAAAACCCTAAATTGAGGGTGAATGTGTCTGTGACTTATGATTTGGATGATAACATTCCTGATGCTAAGGTGGAAAAGGCAAAAACAAGTTCCAAAAAAACCAAAAGGAAGCATCGGAAGGACTCTGATTCTGGTAGCGATAGTGAGGATTCTGTTTTTGAGACCGATAGTGGCAGTGGGTCATCATCTGTTACGGGGTCGGATTATTCTTCTGAAAGTAGTTCAGGTTACAGTTCATCTTCTGATTCAGAGGAGGAACGGAGACGGAGGAGAAAGAAGAAGCAGAAGAGAGGAAGACGCAAGAGGTACAGTTCATCAGAATCATCTGATTCAGATTCTGCTTCAGACTCTGATTCTGATGATGAAAGGAGCCGGAGAAAGAAGAGGCATAATCGAAGACACTGA
Predicted protein sequences of Glyma.07g241300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.07g241300.1.p sequence-type=predicted peptide transcript=Glyma.07g241300.1 locus=Glyma.07g241300 ID=Glyma.07g241300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVKLGERKDLKPAMSAAGGVAQCQKCFQSGHWTYECKNERVYISRPSRTQQLKNPKLRVNVSVTYDLDDNIPDAKVEKAKTSSKKTKRKHRKDSDSGSDSEDSVFETDSGSGSSSVTGSDYSSESSSGYSSSSDSEEERRRRRKKKQKRGRRKRYSSSESSDSDSASDSDSDDERSRRKKRHNRRH*
>Glyma.07g241300.2.p sequence-type=predicted peptide transcript=Glyma.07g241300.2 locus=Glyma.07g241300 ID=Glyma.07g241300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVKLGERKDLKPAMSAAGGVAQCQKCFQSGHWTYECKNERVYISRPSRTQQLKNPKLRVNVSVTYDLDDNIPDAKVEKAKTSSKKTKRKHRKDSDSGSDSEDSVFETDSGSGSSSVTGSDYSSESSSGYSSSSDSEEERRRRRKKKQKRGRRKRYSSSESSDSDSASDSDSDDERSRRKKRHNRRH*