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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23060.1 | AT | Acyl-CoA N-acyltransferases (NAT) superfamily protein | JGI | N/A | IEA |
| GO:0006475 | GO-bp | internal protein amino acid acetylation | EnsemblGenomes | N/A | IEA |
| GO:0017198 | GO-bp | N-terminal peptidyl-serine acetylation | EnsemblGenomes | N/A | IEA |
| GO:0018002 | GO-bp | N-terminal peptidyl-glutamic acid acetylation | EnsemblGenomes | N/A | IEA |
| GO:0022626 | GO-cc | cytosolic ribosome | EnsemblGenomes | N/A | IEA |
| GO:0031415 | GO-cc | NatA complex | EnsemblGenomes | N/A | IEA |
| GO:0008080 | GO-mf | N-acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008080 | GO-mf | N-acetyltransferase activity | JGI | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | JGI | N/A | IEA |
| GO:1990189 | GO-mf | peptide-serine-N-acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:1990190 | GO-mf | peptide-glutamate-N-acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| PTHR23091 | Panther | N-TERMINAL ACETYLTRANSFERASE | JGI | N/A | IEA |
| PTHR23091:SF21 | Panther | JGI | N/A | IEA | |
| PF00583 | PFAM | Acetyltransferase (GNAT) family | JGI | N/A | IEA |
| GN7V-68414 | SoyCyc9-rxn | N-terminal methionine Nα-acetyltransferase | Plant Metabolic Network | ISS |
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Glyma.07g240100 not represented in the dataset |
Glyma.07g240100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g033300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g36880 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g240100.2 sequence-type=transcript locus=Glyma.07g240100 ID=Glyma.07g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TGTATTTGTCCTAATGACAACCACTTTAATGAATAGTGTCAGCCTTTACTAATAAAAACTAACACAGTAATGCTATTTTCAACGGACGCATCAAGTTGCGTGTTGTGATAAAATAGTTATTAACGGAATATTTTGATAGAGATGATACAAGATCATAGGACATTGTGAACTAACAACCAATGGTTTTCACCATATATAAGGATGCCACATGAATTGGATGGTCGGGAGTGAACTCAATCAAGAAAGATCCAATTAATCTGAGAAATCTTTCCTTTCCCAGAGATCACACCTTATATATCTAGTACTACATCACTTGCTTCTTTTAGGTGGCTGAGCTGCTTGAAAGCAAGGAGCTTGTCGGTGTGGTTCGAGGGTGCATTAAGAGTATGCGAACTCCTTCTGAATCATTGCTGAAGATAGGTTGCATATTAGGCCTTAGGGTCTCTCCTACGCACAGGAGAAAGGGGGTTGGACTAAAACTTGTCAACTCAGTAGAAGAATGGATGCTGAGAAATGGGGCTGAATATGCATTCCTAGCAACAGAAAAGAACAATAATGCCTCTATAAACCTATTTACCAACAAATGCAAATATATGAGCCTCAGCTCACTTGTCATATTTGTCCATCCAATAATTAGTTTCCCTGCAAAGCACATTTCCAAGGATATAAAAATTGAGAAGGTGAACATGGACCAGGCAATTTCCTTATACAGAAGAACCCTGAGGGCCAAAGAGTTGTACCCATTAGACATGGATTCTATTTTGAAGGAGAAGCTCAGCTTGGGCACCTGGGTGAGCTATTACAAAGATGAAGGCTGCAGGCTCAACTTGCAGAGGATGGTAGAGAGTGAAGACATAATTACCAATGAAATCACAAGCTCATGGATCATCTTTAGCATATGGAACACTTATGAGGCTTATAAGCTTCAACTTAAAAAGTCTCAGACGACTCTTAGGCTTCTTCACACAACATTAAATCATGCAAGAGACAAAATCTTTCCTTGTCTGAGAATGTCGGTGAGTGAATCACTCTGCACACCCTTTGGATTTCTCTTCCTCTATGGGCTCCATGGAGAGGGAGAGAACCTTGGGGAGCTAATGGAATCCATATGGAGGTTCACATCAAGGTTGGGAGAAAGCTTGAAGGACTGCAGAGTGGTTATAACTGAGTTAGGGTTTGGGGATCCACTTGTAAACCATGTCCCTCAAACAGCTTCTATGTCATGCTTCGATGATATCTGGTACACCAAAAGAATTTCAAGCCATGGTGATGAAAAGGATGATGAACTGCTGATGAAGAGACAAATCGGGAACGTGTTCGTTGACCCTAGAGATTTTTAGGTATATAAGCTTCACGCGGCTACTTTTTGTTGATCTAAGATGGCTTCGATCTAGCATATATCAAGATCTCAGCATAATATTTAGAATTATGTATACCATTGACTTTTAAATTATCTCTTAGCTGAAGGACTACATTTATTATTAAAATCAATTGACAATGA
>Glyma.07g240100.1 sequence-type=CDS polypeptide=Glyma.07g240100.1.p locus=Glyma.07g240100 ID=Glyma.07g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTGACACTTTCAGTATAGAGAGCGGGCTTCTTATAAGAGAGTTTGATGAAGATAGAGATGTTAAGGTGGTGGGGAAGCTTGAGAGGAACTGTGAGATTGAGACTAAAAAGGGGGTCTCCATTTTCACCAACATGATGGATGACCCTTTATCTAGGATTAGGTTCTATCCCCTTCATGTTATGTTGGTGGCTGAGCTGCTTGAAAGCAAGGAGCTTGTCGGTGTGGTTCGAGGGTGCATTAAGAGTATGCGAACTCCTTCTGAATCATTGCTGAAGATAGGTTGCATATTAGGCCTTAGGGTCTCTCCTACGCACAGGAGAAAGGGGGTTGGACTAAAACTTGTCAACTCAGTAGAAGAATGGATGCTGAGAAATGGGGCTGAATATGCATTCCTAGCAACAGAAAAGAACAATAATGCCTCTATAAACCTATTTACCAACAAATGCAAATATATGAGCCTCAGCTCACTTGTCATATTTGTCCATCCAATAATTAGTTTCCCTGCAAAGCACATTTCCAAGGATATAAAAATTGAGAAGGTGAACATGGACCAGGCAATTTCCTTATACAGAAGAACCCTGAGGGCCAAAGAGTTGTACCCATTAGACATGGATTCTATTTTGAAGGAGAAGCTCAGCTTGGGCACCTGGGTGAGCTATTACAAAGATGAAGGCTGCAGGCTCAACTTGCAGAGGATGGTAGAGAGTGAAGACATAATTACCAATGAAATCACAAGCTCATGGATCATCTTTAGCATATGGAACACTTATGAGGCTTATAAGCTTCAACTTAAAAAGTCTCAGACGACTCTTAGGCTTCTTCACACAACATTAAATCATGCAAGAGACAAAATCTTTCCTTGTCTGAGAATGTCGGTGAGTGAATCACTCTGCACACCCTTTGGATTTCTCTTCCTCTATGGGCTCCATGGAGAGGGAGAGAACCTTGGGGAGCTAATGGAATCCATATGGAGGTTCACATCAAGGTTGGGAGAAAGCTTGAAGGACTGCAGAGTGGTTATAACTGAGTTAGGGTTTGGGGATCCACTTGTAAACCATGTCCCTCAAACAGCTTCTATGTCATGCTTCGATGATATCTGGTACACCAAAAGAATTTCAAGCCATGGTGATGAAAAGGATGATGAACTGCTGATGAAGAGACAAATCGGGAACGTGTTCGTTGACCCTAGAGATTTTTAG >Glyma.07g240100.2 sequence-type=CDS polypeptide=Glyma.07g240100.2.p locus=Glyma.07g240100 ID=Glyma.07g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCGAACTCCTTCTGAATCATTGCTGAAGATAGGTTGCATATTAGGCCTTAGGGTCTCTCCTACGCACAGGAGAAAGGGGGTTGGACTAAAACTTGTCAACTCAGTAGAAGAATGGATGCTGAGAAATGGGGCTGAATATGCATTCCTAGCAACAGAAAAGAACAATAATGCCTCTATAAACCTATTTACCAACAAATGCAAATATATGAGCCTCAGCTCACTTGTCATATTTGTCCATCCAATAATTAGTTTCCCTGCAAAGCACATTTCCAAGGATATAAAAATTGAGAAGGTGAACATGGACCAGGCAATTTCCTTATACAGAAGAACCCTGAGGGCCAAAGAGTTGTACCCATTAGACATGGATTCTATTTTGAAGGAGAAGCTCAGCTTGGGCACCTGGGTGAGCTATTACAAAGATGAAGGCTGCAGGCTCAACTTGCAGAGGATGGTAGAGAGTGAAGACATAATTACCAATGAAATCACAAGCTCATGGATCATCTTTAGCATATGGAACACTTATGAGGCTTATAAGCTTCAACTTAAAAAGTCTCAGACGACTCTTAGGCTTCTTCACACAACATTAAATCATGCAAGAGACAAAATCTTTCCTTGTCTGAGAATGTCGGTGAGTGAATCACTCTGCACACCCTTTGGATTTCTCTTCCTCTATGGGCTCCATGGAGAGGGAGAGAACCTTGGGGAGCTAATGGAATCCATATGGAGGTTCACATCAAGGTTGGGAGAAAGCTTGAAGGACTGCAGAGTGGTTATAACTGAGTTAGGGTTTGGGGATCCACTTGTAAACCATGTCCCTCAAACAGCTTCTATGTCATGCTTCGATGATATCTGGTACACCAAAAGAATTTCAAGCCATGGTGATGAAAAGGATGATGAACTGCTGATGAAGAGACAAATCGGGAACGTGTTCGTTGACCCTAGAGATTTTTAG
>Glyma.07g240100.1.p sequence-type=predicted peptide transcript=Glyma.07g240100.1 locus=Glyma.07g240100 ID=Glyma.07g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVDTFSIESGLLIREFDEDRDVKVVGKLERNCEIETKKGVSIFTNMMDDPLSRIRFYPLHVMLVAELLESKELVGVVRGCIKSMRTPSESLLKIGCILGLRVSPTHRRKGVGLKLVNSVEEWMLRNGAEYAFLATEKNNNASINLFTNKCKYMSLSSLVIFVHPIISFPAKHISKDIKIEKVNMDQAISLYRRTLRAKELYPLDMDSILKEKLSLGTWVSYYKDEGCRLNLQRMVESEDIITNEITSSWIIFSIWNTYEAYKLQLKKSQTTLRLLHTTLNHARDKIFPCLRMSVSESLCTPFGFLFLYGLHGEGENLGELMESIWRFTSRLGESLKDCRVVITELGFGDPLVNHVPQTASMSCFDDIWYTKRISSHGDEKDDELLMKRQIGNVFVDPRDF* >Glyma.07g240100.2.p sequence-type=predicted peptide transcript=Glyma.07g240100.2 locus=Glyma.07g240100 ID=Glyma.07g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRTPSESLLKIGCILGLRVSPTHRRKGVGLKLVNSVEEWMLRNGAEYAFLATEKNNNASINLFTNKCKYMSLSSLVIFVHPIISFPAKHISKDIKIEKVNMDQAISLYRRTLRAKELYPLDMDSILKEKLSLGTWVSYYKDEGCRLNLQRMVESEDIITNEITSSWIIFSIWNTYEAYKLQLKKSQTTLRLLHTTLNHARDKIFPCLRMSVSESLCTPFGFLFLYGLHGEGENLGELMESIWRFTSRLGESLKDCRVVITELGFGDPLVNHVPQTASMSCFDDIWYTKRISSHGDEKDDELLMKRQIGNVFVDPRDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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