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Report for Sequence Feature Glyma.07g237700

Feature Type:gene_model
Chromosome:Gm07
Start:41895930
stop:41902181
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g237700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06580.1AT Mevalonate/galactokinase family protein JGI N/AIEA
GO:0006012GO-bp galactose metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0046835GO-bp carbohydrate phosphorylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004335GO-mf galactokinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0005534GO-mf galactose binding EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor EnsemblGenomesN/AIEA
KOG0631 KOG Galactokinase JGI N/AIEA
PTHR10457Panther MEVALONATE KINASE/GALACTOKINASE JGI N/AIEA
PTHR10457:SF7Panther N-ACETYLGALACTOSAMINE KINASE JGI N/AIEA
PF00288PFAM GHMP kinases N terminal domain JGI N/AIEA
PF08544PFAM GHMP kinases C terminal JGI N/AIEA
PF10509PFAM Galactokinase galactose-binding signature JGI N/AIEA
PWY-3821SoyCyc9 D-galactose detoxification Plant Metabolic Network ISS
PWY-6317SoyCyc9 D-galactose degradation I (Leloir pathway) Plant Metabolic Network ISS
PWY-6527SoyCyc9 stachyose degradation Plant Metabolic Network ISS
PWY-7344SoyCyc9 UDP-α-D-galactose biosynthesis Plant Metabolic Network ISS
GN7V-56430SoyCyc9-rxn UDP-glucose 4-epimerase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g237700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g237700
ParalogEvidenceComments
Glyma.17g035800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g237700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g36610 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g237700
>Glyma.07g237700.1 sequence-type=CDS polypeptide=Glyma.07g237700.1.p locus=Glyma.07g237700 ID=Glyma.07g237700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAGCACGAGGAGCTTCCGATCCCGATTTACAACAACCTAGAACCTGTCTATGGCGGAAGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGACATTTTGAAGTCCAAATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGATACGATCGTGGCGATTCGGAAAAATGATGCCGAAAAGGTTCTCAAGATCGCTAACGTGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGGGTACAAAGGTTTCCATGACTATGCAAAATTGAAAGGAGTGGATGTTGGCAAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGGTTCTGGACTATCAAGCTCTGCAGCATTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCGAAGAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCTATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAGTGAACACACTGTCTGATGTTGAAGGGTTATGTGTATCATTTGCTGGTATTCATAACTCATCTGATCCTGTACTTGCTGTAAAGGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAGAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAGCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCGGCTATCTTCAAGTTTTAG
Predicted protein sequences of Glyma.07g237700
>Glyma.07g237700.1.p sequence-type=predicted peptide transcript=Glyma.07g237700.1 locus=Glyma.07g237700 ID=Glyma.07g237700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKHEELPIPIYNNLEPVYGGSSALEEAQLRFDILKSKFIDIFGHHPQIFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKNDAEKVLKIANVNGEKYSLCTYPADPLQEIDLKNHKWGHYFICGYKGFHDYAKLKGVDVGKPVGLEVLVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKELAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLASIVLAIKLGMDPKEAISKVNTLSDVEGLCVSFAGIHNSSDPVLAVKEYLKEEPYTAEEIEAVTGEKLTSFLNNNAAYLEVVKVAKQYKLHQRAAHVYSEAKRVHAFKDVVSSTLSDEDMLKKLGDLMNESHHSCSVLYECSCPELEELVNICRNNGALGARLTGAGWGGCAVALVKESIVPQFILNLKECFYQSRIDKGVIKKNDLGLYVFASKPSSGAAIFKF*






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