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Report for Sequence Feature Glyma.07g221300

Feature Type:gene_model
Chromosome:Gm07
Start:39663346
stop:39666151
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g221300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35120.1AT Single hybrid motif superfamily protein JGI N/AIEA
GO:0006546GO-bp glycine catabolic process JGI N/AIEA
GO:0019464GO-bp glycine decarboxylation via glycine cleavage system EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005960GO-cc glycine cleavage complex EnsemblGenomesN/AIEA
GO:0005960GO-cc glycine cleavage complex JGI N/AIEA
KOG3373 KOG Glycine cleavage system H protein (lipoate-binding) JGI N/AIEA
PTHR11715Panther GLYCINE CLEAVAGE SYSTEM H PROTEIN JGI N/AIEA
PF01597PFAM Glycine cleavage H-protein JGI N/AIEA
GLYCLEAV-PWYSoyCyc9 glycine cleavage Plant Metabolic Network ISS
PWY-181SoyCyc9 photorespiration Plant Metabolic Network ISS
PWY-3841SoyCyc9 folate transformations II Plant Metabolic Network ISS
GN7V-49832SoyCyc9-rxn gcv system Plant Metabolic Network ISS

Expression Patterns of Glyma.07g221300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g221300
ParalogEvidenceComments
Glyma.20g019600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g221300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g34690 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g221300
>Glyma.07g221300.2 sequence-type=transcript locus=Glyma.07g221300 ID=Glyma.07g221300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAACTTTCACCAACCCCCTCAATATAAATAAATGGATGCTCAGCATGACCACAGCATAAGTGTagagagagagagagagagagagagagagagagagagagaAATGGCTTGCAGGCAATTGTGGGCTTCAAGAGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGTTGTTAAAGATTTGAAGTATGCTGATTCTCATGAGTGGGTGAAAGTTGATGAAAATTCTGCAACCGTCGGCATAACTGATCATGCCCAAGATCATTTAGGTGATGTTGTATATGTTGAATTGCCAGAAGTGGGAGCAGCTGTAACACAAGGAGGTAGTTTTGGTGCAGTTGAAAGTGTGAAGGCAACTAGTGACATTAACTCTCCTGTTTCAGGAAAAGTTGTTGAAGTTAATGAAGCGCTTAACAGCTCTCCTGCTTTGGTGAGTTTTATTGCCTAATTCTTAAAGAACTTTTTACATGAAATACAAGTTGTGTATGCTGAGTTTATGTGCATTAACTATTTTTTTCTCCTTTAAGTACTTTGTAGTTTCTACATGCTACATCTTGGATCAGTATGCCTATGCAATGCTGAAGTATTGCAATGAATTCTTTTTTTTTTTATGAACACCAAGTGTTTTCATGTTGTCCTACATTTCTGCATACAGATCAATTCAAGCCCTTATAAAGATGGATGGATAATTAAAGTTGAAATAAGTGACAATGGTGAACTAAACAACTTGATGGATTCAGATCAATACTCCAAATTCTGTGAAGAAGAAGATTCCAAGCACTGATGATCTTGGCAAGATCTTTCAGCACTCTTCAATCTCCATGGTGTAGATCATGTTTTAATTGGGAAAGCTCAATTGCTTATTCCATTTTCTCCTTGTGTTATGTCTTGACTGCTCTATTTTTATTTTTCGAGGGCTTATGATTCAGTGGAATGATATTTTTCACTCTTTGCAATGGAAAAATGAATTTGACAACGTGGCAAATTGATGATGATAATAATAATAACTTAAATAGTTTTATTTTAAAGTTATGCTATTGTTGTTAGATGACGGCTATAATAGTTTGATAAATAAGATGGACAGTAGTTATC
Coding sequences of Glyma.07g221300
>Glyma.07g221300.1 sequence-type=CDS polypeptide=Glyma.07g221300.1.p locus=Glyma.07g221300 ID=Glyma.07g221300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGCTCAGCATGACCACAGCATAAGTGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGCTTGCAGGCAATTGTGGGCTTCAAGAGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGTTGTTAAAGATTTGAAGTATGCTGATTCTCATGAGTGGGTGAAAGTTGATGAAAATTCTGCAACCGTCGGCATAACTGATCATGCCCAAGATCATTTAGGTGATGTTGTATATGTTGAATTGCCAGAAGTGGGAGCAGCTGTAACACAAGGAGGTAGTTTTGGTGCAGTTGAAAGTGTGAAGGCAACTAGTGACATTAACTCTCCTGTTTCAGGAAAAGTTGTTGAAGTTAATGAAGCGCTTAACAGCTCTCCTGCTTTGATCAATTCAAGCCCTTATAAAGATGGATGGATAATTAAAGTTGAAATAAGTGACAATGGTGAACTAAACAACTTGATGGATTCAGATCAATACTCCAAATTCTGTGAAGAAGAAGATTCCAAGCACTGA

>Glyma.07g221300.2 sequence-type=CDS polypeptide=Glyma.07g221300.2.p locus=Glyma.07g221300 ID=Glyma.07g221300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGCTCAGCATGACCACAGCATAAGTGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGCTTGCAGGCAATTGTGGGCTTCAAGAGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGTTGTTAAAGATTTGAAGTATGCTGATTCTCATGAGTGGGTGAAAGTTGATGAAAATTCTGCAACCGTCGGCATAACTGATCATGCCCAAGATCATTTAGGTGATGTTGTATATGTTGAATTGCCAGAAGTGGGAGCAGCTGTAACACAAGGAGGTAGTTTTGGTGCAGTTGAAAGTGTGAAGGCAACTAGTGACATTAACTCTCCTGTTTCAGGAAAAGTTGTTGAAGTTAATGAAGCGCTTAACAGCTCTCCTGCTTTGGTGAGTTTTATTGCCTAA
Predicted protein sequences of Glyma.07g221300
>Glyma.07g221300.1.p sequence-type=predicted peptide transcript=Glyma.07g221300.1 locus=Glyma.07g221300 ID=Glyma.07g221300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAQHDHSISVEREREREREREREMACRQLWASRAASYLRISVFHRGFSNVVKDLKYADSHEWVKVDENSATVGITDHAQDHLGDVVYVELPEVGAAVTQGGSFGAVESVKATSDINSPVSGKVVEVNEALNSSPALINSSPYKDGWIIKVEISDNGELNNLMDSDQYSKFCEEEDSKH*

>Glyma.07g221300.2.p sequence-type=predicted peptide transcript=Glyma.07g221300.2 locus=Glyma.07g221300 ID=Glyma.07g221300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAQHDHSISVEREREREREREREMACRQLWASRAASYLRISVFHRGFSNVVKDLKYADSHEWVKVDENSATVGITDHAQDHLGDVVYVELPEVGAAVTQGGSFGAVESVKATSDINSPVSGKVVEVNEALNSSPALVSFIA*






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