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Report for Sequence Feature Glyma.07g212500

Feature Type:gene_model
Chromosome:Gm07
Start:38404544
stop:38409925
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g212500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G19260.1AT LAG1 homologue 2 JGI N/AIEA
GO:0046513GO-bp ceramide biosynthetic process EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0050291GO-mf sphingosine N-acyltransferase activity EnsemblGenomesN/AIEA
KOG1607 KOG Protein transporter of the TRAM (translocating chain-associating membrane) superfamily JGI N/AIEA
PTHR12560Panther LONGEVITY ASSURANCE FACTOR 1 (LAG1) JGI N/AIEA
PF03798PFAM TLC domain JGI N/AIEA

Expression Patterns of Glyma.07g212500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g212500
ParalogEvidenceComments
Glyma.02g132400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g212500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g33530 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g212500
>Glyma.07g212500.2 sequence-type=transcript locus=Glyma.07g212500 ID=Glyma.07g212500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTCTCAGCATCTGTGTATTTTTCCGTTGCAATTGCAACCTCCCTCTTCACACTTTCCCTCCTCCGTCTTCTTCCTCTGCACGCATTTTCCGCTGCAGCAACTCCAAAGCCGCCAGCTCAGCATCCTCGAAATCAGGTGTTGCAATCTGGCATGGATTTCCTCTGGAGCGAGAATGCGACGACGCCGCGCGCCTCGCATTTCTCCGTCGCGATCTGCTTCGCCTTCGCCAGTTTCGCGGCCAGGTTCTTCCTTGACAGATTCGTCTTTCGCAGTTTGGCCATTAGGATGTTGACAAAGGGCAGAGCTCCTTCACGTATTACTAAGGAAATGCAAGTAAAGATTGGAAAATGCTCAGAGTCAATGTGGAAGCTAACATATTATGCTGCAGTTGAAGCATTTGTTCTTAAAATTACCTACCATGAACCCTGGTTCACTAATACGAAGTTATACTTCAATGACTGGCCAAATCATGAGTTGAAGAGTCCCCTAGTGTTGTACTACATGTGCCAGTGTGGGTTCTACATATATAGCATTGCTGCTATTCTCACATGGGAGACTCGAAGGAAGGATTTTTCAGTGATGTTTACTCACCATGTAATTACTGTTTTACTGATTGGGATTTCATATCTAACAAGTTTTTTTAGGGTTGGCTCCATAATCCTCGCCCTTCATGATGCAAGTGACGTATTCATGGAAGCTGCCAAGGTTTTCAAGTATTCTGGAAGGGAGTTTGGTGCAAGTGTGTGTTTTGGATTCTTTGCTGTTTCGTGGCTCATACTGCGGCTAATTTTCTTTCCATTTTGGGTTATTAAAGCAACGAGCATTGATCTTCAGCAAGTCTTAAGCCTGTCAGAGGGTTTTCATATGTTTCTTTACTATGTTTTTAATACAATGCTCATAATGCTGCTCATCTTCCATATATATTGGTGGAAGCTCATTTGTGCGATGATCTTGAGGCAGCTGAAAAATAGGGGAAAAGTTGGCGAGGATATAAGATCAGATTCAGATGATGACTGAATAGACGAAGAAGGGTTTTGTTGAGTTTTCTTTGCTCCCGCTAGTTGGTGGTGGTAGCTCTGATGGATACTGTTTTTGACTTGTCTATAGATTTCTAGGAGTTCAGTTGGTTAATACAACCAGTGGAGGAGATCTGAATTTTCGTTAGTTTCAAAATTTTCATTGATTACCAAGTAAAAAGGGAGTAGGAAACCGTCCAAAGCATATTTTGATTCTTATATTTTTGCTGTATAAATGATAGGCATTCCTGTATAATTGTTTTTCCAAACGAACCCGTTTAGGTTAACTAGGGGTTGAATGACAAGTGGCTTATAACAAATATGAAGGAGAAAGAAAAACTTACAGTCATTCTACTTTTGTAGTTGCGCTTTTGAGGAATAAGCCGCAGACTGGTGCATTGTACTGTTATTGACTGTGAATCTTTGGTTTAACttctttttttt
Coding sequences of Glyma.07g212500
>Glyma.07g212500.1 sequence-type=CDS polypeptide=Glyma.07g212500.1.p locus=Glyma.07g212500 ID=Glyma.07g212500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCCTCTGGAGCGAGAATGCGACGACGCCGCGCGCCTCGCATTTCTCCGTCGCGATCTGCTTCGCCTTCGCCAGTTTCGCGGCCAGGTTCTTCCTTGACAGATTCGTCTTTCGCAGTTTGGCCATTAGGATGTTGACAAAGGGCAGAGCTCCTTCACGTATTACTAAGGAAATGCAAGTAAAGATTGGAAAATGCTCAGAGTCAATGTGGAAGCTAACATATTATGCTGCAGTTGAAGCATTTGTTCTTAAAATTACCTACCATGAACCCTGGTTCACTAATACGAAGTTATACTTCAATGACTGGCCAAATCATGAGTTGAAGAGTCCCCTAGTGTTGTACTACATGTGCCAGTGTGGGTTCTACATATATAGCATTGCTGCTATTCTCACATGGGAGACTCGAAGGAAGGATTTTTCAGTGATGTTTACTCACCATGTAATTACTGTTTTACTGATTGGGATTTCATATCTAACAAGTTTTTTTAGGGTTGGCTCCATAATCCTCGCCCTTCATGATGCAAGTGACGTATTCATGGAAGCTGCCAAGGTTTTCAAGTATTCTGGAAGGGAGTTTGGTGCAAGTGTGTGTTTTGGATTCTTTGCTGTTTCGTGGCTCATACTGCGGCTAATTTTCTTTCCATTTTGGGTTATTAAAGCAACGAGCATTGATCTTCAGCAAGTCTTAAGCCTGTCAGAGGGTTTTCATATGTTTCTTTACTATGTTTTTAATACAATGCTCATAATGCTGCTCATCTTCCATATATATTGGTGGAAGCTCATTTGTGCGATGATCTTGAGGCAGCTGAAAAATAGGGGAAAAGTTGGCGAGGATATAAGATCAGATTCAGATGATGACTGA

>Glyma.07g212500.2 sequence-type=CDS polypeptide=Glyma.07g212500.2.p locus=Glyma.07g212500 ID=Glyma.07g212500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCCTCTGGAGCGAGAATGCGACGACGCCGCGCGCCTCGCATTTCTCCGTCGCGATCTGCTTCGCCTTCGCCAGTTTCGCGGCCAGGTTCTTCCTTGACAGATTCGTCTTTCGCAGTTTGGCCATTAGGATGTTGACAAAGGGCAGAGCTCCTTCACGTATTACTAAGGAAATGCAAGTAAAGATTGGAAAATGCTCAGAGTCAATGTGGAAGCTAACATATTATGCTGCAGTTGAAGCATTTGTTCTTAAAATTACCTACCATGAACCCTGGTTCACTAATACGAAGTTATACTTCAATGACTGGCCAAATCATGAGTTGAAGAGTCCCCTAGTGTTGTACTACATGTGCCAGTGTGGGTTCTACATATATAGCATTGCTGCTATTCTCACATGGGAGACTCGAAGGAAGGATTTTTCAGTGATGTTTACTCACCATGTAATTACTGTTTTACTGATTGGGATTTCATATCTAACAAGTTTTTTTAGGGTTGGCTCCATAATCCTCGCCCTTCATGATGCAAGTGACGTATTCATGGAAGCTGCCAAGGTTTTCAAGTATTCTGGAAGGGAGTTTGGTGCAAGTGTGTGTTTTGGATTCTTTGCTGTTTCGTGGCTCATACTGCGGCTAATTTTCTTTCCATTTTGGGTTATTAAAGCAACGAGCATTGATCTTCAGCAAGTCTTAAGCCTGTCAGAGGGTTTTCATATGTTTCTTTACTATGTTTTTAATACAATGCTCATAATGCTGCTCATCTTCCATATATATTGGTGGAAGCTCATTTGTGCGATGATCTTGAGGCAGCTGAAAAATAGGGGAAAAGTTGGCGAGGATATAAGATCAGATTCAGATGATGACTGA
Predicted protein sequences of Glyma.07g212500
>Glyma.07g212500.1.p sequence-type=predicted peptide transcript=Glyma.07g212500.1 locus=Glyma.07g212500 ID=Glyma.07g212500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFLWSENATTPRASHFSVAICFAFASFAARFFLDRFVFRSLAIRMLTKGRAPSRITKEMQVKIGKCSESMWKLTYYAAVEAFVLKITYHEPWFTNTKLYFNDWPNHELKSPLVLYYMCQCGFYIYSIAAILTWETRRKDFSVMFTHHVITVLLIGISYLTSFFRVGSIILALHDASDVFMEAAKVFKYSGREFGASVCFGFFAVSWLILRLIFFPFWVIKATSIDLQQVLSLSEGFHMFLYYVFNTMLIMLLIFHIYWWKLICAMILRQLKNRGKVGEDIRSDSDDD*

>Glyma.07g212500.2.p sequence-type=predicted peptide transcript=Glyma.07g212500.2 locus=Glyma.07g212500 ID=Glyma.07g212500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFLWSENATTPRASHFSVAICFAFASFAARFFLDRFVFRSLAIRMLTKGRAPSRITKEMQVKIGKCSESMWKLTYYAAVEAFVLKITYHEPWFTNTKLYFNDWPNHELKSPLVLYYMCQCGFYIYSIAAILTWETRRKDFSVMFTHHVITVLLIGISYLTSFFRVGSIILALHDASDVFMEAAKVFKYSGREFGASVCFGFFAVSWLILRLIFFPFWVIKATSIDLQQVLSLSEGFHMFLYYVFNTMLIMLLIFHIYWWKLICAMILRQLKNRGKVGEDIRSDSDDD*






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