SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73180.1 | AT | Eukaryotic translation initiation factor eIF2A family protein | JGI | N/A | IEA |
| GO:0006412 | GO-bp | translation | EnsemblGenomes | N/A | IEA |
| GO:0006413 | GO-bp | translational initiation | EnsemblGenomes | N/A | IEA |
| GO:0006417 | GO-bp | regulation of translation | EnsemblGenomes | N/A | IEA |
| GO:0022627 | GO-cc | cytosolic small ribosomal subunit | EnsemblGenomes | N/A | IEA |
| GO:0000049 | GO-mf | tRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003729 | GO-mf | mRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003743 | GO-mf | translation initiation factor activity | EnsemblGenomes | N/A | IEA |
| GO:0043022 | GO-mf | ribosome binding | EnsemblGenomes | N/A | IEA |
| KOG2315 | KOG | Predicted translation initiation factor related to eIF-3a | JGI | N/A | IEA |
| PTHR13227 | Panther | NUCLEASE-RELATED | JGI | N/A | IEA |
| PF08662 | PFAM | Eukaryotic translation initiation factor eIF2A | JGI | N/A | IEA |
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Glyma.07g208200 not represented in the dataset |
Glyma.07g208200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g137200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g33000 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g208200.1 sequence-type=CDS polypeptide=Glyma.07g208200.1.p locus=Glyma.07g208200 ID=Glyma.07g208200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATCAAATAGCCATTCACCATCTCTCGAGATATTAGTTCGAGGACCAGAGGATTTCTCGCTCTGGACCGGACCCCCCTTCGCGAACGATCAACCAAGCGTCAAGCTCGAGAAAGTGAACTGCATCAATGCGAAGTTCAGCGACGACGGATCCAATCTCATGGTGACGAAATCGAACTCGCTGATTAGCGTGTACGATTGCAGCACTGCCAAGGAGATTAGGGTTTTTGAAGTGCCCAATGTCGTTGCTGCGGCCTTGTCACCCAAAGGAACTTACTTGCAAACCTTCCAGAAGCCTTCGGGGCCGCAGGAGAAGAATGTAACGCTGTGGAGCATCGAGACCGGTGCTGCGGTTTACCAGCAGTCGCAGAAGAACATGACGAAAGCCAATTGGCCTGCGATTCAGTTTAGTTCTGATGAAGCTACTGTGTGTCGGTTGGCCACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAGGGAGTTGTCTGTCGGTTGAGAGTTCAGGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCGGGATCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGATTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGACGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAATTATGCTATCTGACCACAGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCCTGGAATTTGCTGTTGTATATGGGTTTATGCCTGCTAAAGCAACTCTGTTTGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTTTGGGATTACATAGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGTTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTATACTTCAAAAAGATGTTTGATAAATTGTACCAGGCTGATTGGAAACCAGAGTCACCCAGTAAGTTTGGTGATATTGCTGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAGAAACCATCAGGTCAAGGACCACCAAAGTCAACCCAGACTTCTACAAAAGCCTCCTCTACCAACCCCCCAACACAAAAACCTGCTGCATATCGTCCTCCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGTTGTTTGGAGAGACTCCTGCAGAACCACTGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTTCTGATGCCAGTTCTTCGTGA
>Glyma.07g208200.1.p sequence-type=predicted peptide transcript=Glyma.07g208200.1 locus=Glyma.07g208200 ID=Glyma.07g208200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASNSHSPSLEILVRGPEDFSLWTGPPFANDQPSVKLEKVNCINAKFSDDGSNLMVTKSNSLISVYDCSTAKEIRVFEVPNVVAAALSPKGTYLQTFQKPSGPQEKNVTLWSIETGAAVYQQSQKNMTKANWPAIQFSSDEATVCRLATNEVQFFDTGDFSKGVVCRLRVQGVAAAELSSLPGSHVAAFVPESKGIPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQADWKPESPSKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQTSTKASSTNPPTQKPAAYRPPHAKNASAIQAELFGETPAEPLSKNALRNKKKREKQKEKKASDASSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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