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Report for Sequence Feature Glyma.07g207200

Feature Type:gene_model
Chromosome:Gm07
Start:37640045
stop:37643952
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g207200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43710.1AT Plant stearoyl-acyl-carrier-protein desaturase family protein JGI N/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006631GO-bp fatty acid metabolic process JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0045300GO-mf acyl-[acyl-carrier-protein] desaturase activity EnsemblGenomesN/AIEA
GO:0045300GO-mf acyl-[acyl-carrier-protein] desaturase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF03405PFAM Fatty acid desaturase JGI N/AIEA
PWY-5147SoyCyc9 oleate biosynthesis I (plants) Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
GN7V-53946SoyCyc9-rxn stearoyl-[acyl-carrier-protein] 9-desaturase Plant Metabolic Network ISS

Proteins Associated with Glyma.07g207200
LocusGene SymbolProtein Name
ACPD-2 stearoyl-acyl carrier protein desaturase gene 2
SAD2 stearoyl-ACP desaturase 2

Expression Patterns of Glyma.07g207200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g207200
ParalogEvidenceComments
Glyma.02g138100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g207200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g32850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g207200
>Glyma.07g207200.1 sequence-type=CDS polypeptide=Glyma.07g207200.1.p locus=Glyma.07g207200 ID=Glyma.07g207200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCCATTGCTTCATCTGACTCACTCATCAATGGCTCTGAGACTGAACCCTATCCCCACCCAAACCTTCTCCCTCCCCCAAATGCCCAGCCTCAGATCTCCCCGCTTCCGCATGGCTTCCACCCTCCGCTCCGGTTCCAAAGAGGTTGAAAATATTAAGAAGCCATTCACTCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCCCAGAAGATTGAGATTTTCAAATCTTTGGAGGATTGGGCTGACCAGAACATCTTGACTCATCTTAAACCTGTAGAAAAATGTTGGCAACCACAGGATTTTTTACCCGACCCCTCCTCAGATGGATTTGAAGAGCAAGTGAAGGAACTGAGAGAGAGAGCAAAGGAGATTCCAGATGATTACTTTGTTGTTCTTGTCGGAGACATGATCACAGAGGAAGCTCTGCCTACTTACCAAACTATGTTAAATACTTTGGATGGAGTTCGTGATGAAACAGGTGCCAGCCTTACTTCCTGGGCAATTTGGACAAGGGCATGGACTGCTGAAGAAAACAGACACGGTGATCTTCTTAACAAATATCTGTACTTGAGTGGACGAGTTGACATGAAACAAATTGAGAAGACAATTCAGTACCTTATTGGGTCTGGGATGGATCCTCGGACCGAGAACAGCCCCTACCTTGGTTTCATTTACACTTCATTTCAAGAGAGGGCAACCTTCATATCCCACGGAAACACGGCCAGGCTTGCGAAGGAGCATGGTGACATAAAATTGGCACAGATCTGCGGCATGATTGCCTCAGATGAGAAGCGCCACGAGACTGCATACACAAAGATAGTGGAAAAGCTGTTTGAGGTTGATCCTGATGGTACAGTTATGGCATTTGCCGACATGATGAGGAAGAAGATTGCTATGCCAGCACACCTTATGTATGACGGCCGCGACGACAACCTGTTTGATAACTACTCTGCCGTCGCGCAGCGCATTGGGGTCTACACTGCAAAGGACTATGCTGACATACTCGAATTTCTGGTGGGGAGGTGGAAGGTGGAGCAGCTAACCGGACTTTCAGGTGAGGGAAGAAAGGCTCAGGAATACGTTTGTGGGCTGCCACCAAGAATCAGAAGGTTGGAGGAGAGAGCTCAAGCAAGAGGCAAGGAGTCGTCAACACTTAAATTCAGTTGGATTCATGACAGGGAAGTACTACTCTAA
Predicted protein sequences of Glyma.07g207200
>Glyma.07g207200.1.p sequence-type=predicted peptide transcript=Glyma.07g207200.1 locus=Glyma.07g207200 ID=Glyma.07g207200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLLHLTHSSMALRLNPIPTQTFSLPQMPSLRSPRFRMASTLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFKSLEDWADQNILTHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGMIASDEKRHETAYTKIVEKLFEVDPDGTVMAFADMMRKKIAMPAHLMYDGRDDNLFDNYSAVAQRIGVYTAKDYADILEFLVGRWKVEQLTGLSGEGRKAQEYVCGLPPRIRRLEERAQARGKESSTLKFSWIHDREVLL*






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