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Report for Sequence Feature Glyma.07g193700

Feature Type:gene_model
Chromosome:Gm07
Start:36227234
stop:36234228
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g193700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62050.1AT homolog of yeast oxidase assembly 1 (OXA1) JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0051205GO-bp protein insertion into membrane EnsemblGenomesN/AIEA
GO:0051205GO-bp protein insertion into membrane JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0032977GO-mf membrane insertase activity EnsemblGenomesN/AIEA
KOG1239 KOG Inner membrane protein translocase involved in respiratory chain assembly JGI N/AIEA
PTHR12428Panther OXA1 JGI N/AIEA
PTHR12428:SF3Panther JGI N/AIEA
PF02096PFAM 60Kd inner membrane protein JGI N/AIEA

Expression Patterns of Glyma.07g193700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g193700
ParalogEvidenceComments
Glyma.13g182900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g193700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g31320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g193700
>Glyma.07g193700.2 sequence-type=transcript locus=Glyma.07g193700 ID=Glyma.07g193700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGATATTTCCGTCAAAACGCGTCGTTCAGCTGCTCATCGGCGTCGTTTTGAGGTTAAAGAATGAAATTAAAGTATAGTGTACCCACAAACCCCTACAAACCCGTTCTTCTCTGCTATTTTGTTTGGAACACTGCGTCTTCAACCCGAAGGCTGCGCCACCACCTCAGCCTCCATCGTCCACGAATTGGCTAAGAATACCAATGGCATACCGACGGTGCCTCTTGATAAGAGGGAACCTCGTGGATCGGAGGTGCCATCCGTCTTTCAGTTATGTTCTCCACAGTGACCAGGGGAAGCACGAAAACACCAATGAAAAATCATCTTCAGGAGGGGATGGTGATTTTACCCAAACAAGATATGGTTTCTGCCGATATATGTCGACGGTGAATCAGGGTTCGGATAAGATTAGTAGTGACGTAATGACTGATGTGGCTGATGTCCTCACCAACACAACCATGGATGCTGTAGTTTCTCAGGCTCCCGTTGTCAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTTATAGATGCTGTGCATTCCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCATTTGGAAGAGATAAAGCAACAAATGGAGGGACTGACTATGGATCCCGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAACTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAGGGACTCTTTATCCAAGGGCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCATCATTCAAGCATGGCGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCTTGTACATTTTTCCAGCTTTGACAGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGCACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCACCACCCACCACCACCAGTGCTCCTCAATCTCCCTTTTCTATATTTCCAGCTCTAAAACAAGCTACATCATCAACAACAAATGGGCAAAGCTCAATTCCAGAAGAAGCTTCAAAACATTCAAATAAAAAAATATCTTCTTCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAGAACCAGAAGTGAGGAAAATTTACAATAATCCTAAATTAAGCCATCTATACATGGAGCAATTGTGCTCAGATTTTTGTTATATTTTATGATCCTGGGATGAGGGAGAAATTAGTTTAAACTTTGTTTGCTTAGGAAGTTAAAACTTTTGCTTATCGTGTTGTCTACACTCGATTCATGGGTTTCTCAATTCTTGTGTAAAACTTGGTCCCTATCAGACTGGGAGGCCTCAATAATTTTGTATAACTTTTCTTCAATTTTTCATATTCATTTTAAAAATTAATGTGATCAAAAGATTGCTAATATTA
Coding sequences of Glyma.07g193700
>Glyma.07g193700.1 sequence-type=CDS polypeptide=Glyma.07g193700.1.p locus=Glyma.07g193700 ID=Glyma.07g193700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATACCGACGGTGCCTCTTGATAAGAGGGAACCTCGTGGATCGGAGGTGCCATCCGTCTTTCAGTTATGTTCTCCACAGTGACCAGGGGAAGCACGAAAACACCAATGAAAAATCATCTTCAGGAGGGGATGGTGATTTTACCCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACCAATGGGTTTTTTTGCACATTCCCGTGATAGATTTCTTTCTCCGTGCTCCAGATATGGTTTCTGCCGATATATGTCGACGGTGAATCAGGGTTCGGATAAGATTAGTAGTGACGTAATGACTGATGTGGCTGATGTCCTCACCAACACAACCATGGATGCTGTAGTTTCTCAGGCTCCCGTTGTCAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTTATAGATGCTGTGCATTCCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCATTTGGAAGAGATAAAGCAACAAATGGAGGGACTGACTATGGATCCCGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAACTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAGGGACTCTTTATCCAAGGGCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCATCATTCAAGCATGGCGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCTTGTACATTTTTCCAGCTTTGACAGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGCACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCACCACCCACCACCACCAGTGCTCCTCAATCTCCCTTTTCTATATTTCCAGCTCTAAAACAAGCTACATCATCAACAACAAATGGGCAAAGCTCAATTCCAGAAGAAGCTTCAAAACATTCAAATAAAAAAATATCTTCTTCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAGAACCAGAAGTGA

>Glyma.07g193700.2 sequence-type=CDS polypeptide=Glyma.07g193700.2.p locus=Glyma.07g193700 ID=Glyma.07g193700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATACCGACGGTGCCTCTTGATAAGAGGGAACCTCGTGGATCGGAGGTGCCATCCGTCTTTCAGTTATGTTCTCCACAGTGACCAGGGGAAGCACGAAAACACCAATGAAAAATCATCTTCAGGAGGGGATGGTGATTTTACCCAAACAAGATATGGTTTCTGCCGATATATGTCGACGGTGAATCAGGGTTCGGATAAGATTAGTAGTGACGTAATGACTGATGTGGCTGATGTCCTCACCAACACAACCATGGATGCTGTAGTTTCTCAGGCTCCCGTTGTCAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTTATAGATGCTGTGCATTCCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCATTTGGAAGAGATAAAGCAACAAATGGAGGGACTGACTATGGATCCCGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAACTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAGGGACTCTTTATCCAAGGGCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCATCATTCAAGCATGGCGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCTTGTACATTTTTCCAGCTTTGACAGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGCACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCACCACCCACCACCACCAGTGCTCCTCAATCTCCCTTTTCTATATTTCCAGCTCTAAAACAAGCTACATCATCAACAACAAATGGGCAAAGCTCAATTCCAGAAGAAGCTTCAAAACATTCAAATAAAAAAATATCTTCTTCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAGAACCAGAAGTGA
Predicted protein sequences of Glyma.07g193700
>Glyma.07g193700.1.p sequence-type=predicted peptide transcript=Glyma.07g193700.1 locus=Glyma.07g193700 ID=Glyma.07g193700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYRRCLLIRGNLVDRRCHPSFSYVLHSDQGKHENTNEKSSSGGDGDFTQTRSFGSSLNGPMGFFAHSRDRFLSPCSRYGFCRYMSTVNQGSDKISSDVMTDVADVLTNTTMDAVVSQAPVVNEVAIAAADSFLPVQALQYVIDAVHSYTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKQQMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALYIFPALTALSFLITVECNMQEGMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGLVLKVPGVKKTLGIPEIPVAPPTTTSAPQSPFSIFPALKQATSSTTNGQSSIPEEASKHSNKKISSSSVISQRLRSLEKQVKGRKKNQK*

>Glyma.07g193700.2.p sequence-type=predicted peptide transcript=Glyma.07g193700.2 locus=Glyma.07g193700 ID=Glyma.07g193700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYRRCLLIRGNLVDRRCHPSFSYVLHSDQGKHENTNEKSSSGGDGDFTQTRYGFCRYMSTVNQGSDKISSDVMTDVADVLTNTTMDAVVSQAPVVNEVAIAAADSFLPVQALQYVIDAVHSYTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKQQMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALYIFPALTALSFLITVECNMQEGMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGLVLKVPGVKKTLGIPEIPVAPPTTTSAPQSPFSIFPALKQATSSTTNGQSSIPEEASKHSNKKISSSSVISQRLRSLEKQVKGRKKNQK*






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