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Report for Sequence Feature Glyma.07g191000

Feature Type:gene_model
Chromosome:Gm07
Start:35856065
stop:35858076
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g191000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05000.1AT Vacuolar protein sorting-associated protein VPS28 family protein JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0032509GO-bp endosome transport via multivesicular body sorting pathway EnsemblGenomesN/AIEA
GO:0043328GO-bp protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway EnsemblGenomesN/AIEA
GO:0000813GO-cc ESCRT I complex EnsemblGenomesN/AIEA
GO:0005768GO-cc endosome EnsemblGenomesN/AIEA
KOG3284 KOG Vacuolar sorting protein VPS28 JGI N/AIEA
PTHR12937Panther VACUOLAR PROTEIN SORTING 28, ISOFORM 2 (VPS28) JGI N/AIEA
PF03997PFAM VPS28 protein JGI N/AIEA

Expression Patterns of Glyma.07g191000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g191000
ParalogEvidenceComments
Glyma.08g058200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g191000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g31030 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g191000
>Glyma.07g191000.1 sequence-type=CDS polypeptide=Glyma.07g191000.1.p locus=Glyma.07g191000 ID=Glyma.07g191000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTACCATGGAGGTTAAGCTATGGAATGACAAGCGCGAGAGAGAAATGTATGACAACTTTGGGGAGCTTTATGCCATTATCAAAGCCACTGAGAGGCTTGAGAAGGCCTATGTTAGAGATATAATCTCACCCCAGGAATATGAGTTAGAGTGCCAGAAGCTCATAGCTCATTTCAAAACCTTAGCTTCCACCCTTAAAGACACCGTGCCTAGCATTGAGCGATTTGCAGATACTTACAAGATGGAGTGCCCAGCGGCGATTAACCGTCTTGTGGTTTCCGGTGTTCCTGCTACGGTGGAGCATCGTGCGACTGTGGCTGCCTCTGCTTCCACCTCGGCTGCTATTGTGGCCGAGTGCGTGCAGAATTTTATTACTTCTATGGATTCTTTGAAACTTAACATGGTGGCTGTGGATCAGGTGCACCCGTTGCTCTCGGACCTTTATGCTTCACTCAATAAGTTGACTATCCTGCCACCTGATTTTGAGGGGAAAACAAAAATGAAGGAGTGGATTGCGAGGTTATCCAAGATGGGTGCAGCTGATGAGTTGACTGAACAACAGGCGCGGCAGCTTCACTTTGATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCCCTGCCCAATGCTGGTACATGA
Predicted protein sequences of Glyma.07g191000
>Glyma.07g191000.1.p sequence-type=predicted peptide transcript=Glyma.07g191000.1 locus=Glyma.07g191000 ID=Glyma.07g191000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTMEVKLWNDKREREMYDNFGELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLASTLKDTVPSIERFADTYKMECPAAINRLVVSGVPATVEHRATVAASASTSAAIVAECVQNFITSMDSLKLNMVAVDQVHPLLSDLYASLNKLTILPPDFEGKTKMKEWIARLSKMGAADELTEQQARQLHFDLESSYNSFMAALPNAGT*






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