SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21470.1 | AT | riboflavin kinase/FMN hydrolase | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009231 | GO-bp | riboflavin biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009231 | GO-bp | riboflavin biosynthetic process | JGI | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0008531 | GO-mf | riboflavin kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0008531 | GO-mf | riboflavin kinase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG3110 | KOG | Riboflavin kinase | JGI | N/A | IEA |
| PTHR22749 | Panther | RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE | JGI | N/A | IEA |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | N/A | IEA |
| PF01687 | PFAM | Riboflavin kinase | JGI | N/A | IEA |
| RIBOSYN2-PWY | SoyCyc9 | flavin biosynthesis I (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-43474 | SoyCyc9-rxn | riboflavin kinase | Plant Metabolic Network | ISS |
|
Glyma.07g190300 not represented in the dataset |
Glyma.07g190300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g058800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g30970 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g190300.1 sequence-type=CDS polypeptide=Glyma.07g190300.1.p locus=Glyma.07g190300 ID=Glyma.07g190300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGGTGGCGAAGAAGTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAGATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGGAATGGGACGGAAGAGAAGCTCAGAAGATAATTGGAACGACGCCGTTTGAGGCCGCTGCTGCGGTTGTGCAAGATTATCAACTTCCCTGCTCCGCCATTGAATTCCTCTCCGAAATTTCGCCACTCTTCTCTGACCAGTGGTGCAACATTAAAGCACTTCCTGGTGCTAATAGGTTGGTTAAACATTTGAAGAGTCATGGAGTTCCTATGGCCTTGGCGTCAAACTCTCCAAGGGAAAGCATCGAAGCCAAAATATCCTATCATGATGGATGGAAGAATTCTTTCTCTGTTATAATTGGTGGAGATGAAGTAAGAACAGGGAAACCTTCCCCTGAAATATTCCTTGAAGCTGCTAGGAGGTTAAACATGGAGCCTTCCAGCTGTCTTGTTATTGAAGACTCTCTACCTGGGGTTACTGCAGGAAAGACTGCTGAAATGGAAGTAGTTGTTGTACCATCACTTCCAAAACAGTCGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTCGAAAAGTGGGGTCTGCCTCCATTTGAAGATTGGGTGGAGGGAACTTTGCCCGTAGATCCCTGGTATATTGGTGGTCCTGTTGTCAAGGGATTTGGTCGTGGCTCAAAGGTACTTGGGATCCCTACAGCCAATTTATCAACAGAGGGCTATTCAGATCTCCTTTCAGAGTATCCTGCAGGTGTTTATTTTGGTTGGGCTGGATTGTCGGCAAGAGGTGTTTTTAAAATGGTGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAGAACCATGGTTACTCCATGACTTTAATGAAGATTTCTATGGGGAAGAACTGCGGCTTGTTATAGTTGGTTACATACGTCCCGAGGTCAATTTTTCATCCCTTGAAAGCTTGGTAGCTAAAATTCATGAAGATCGAAGAGTTGCTGAGAGGGCTCTTGATCTTCCCTTATATTCAAGTTTTAAGAATGATTCGTATTTGAGAAGCTCTTAG
>Glyma.07g190300.1.p sequence-type=predicted peptide transcript=Glyma.07g190300.1 locus=Glyma.07g190300 ID=Glyma.07g190300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVAKKLIRCVILDLDGTLLNTDGIVGNVLKVMLGKYGKEWDGREAQKIIGTTPFEAAAAVVQDYQLPCSAIEFLSEISPLFSDQWCNIKALPGANRLVKHLKSHGVPMALASNSPRESIEAKISYHDGWKNSFSVIIGGDEVRTGKPSPEIFLEAARRLNMEPSSCLVIEDSLPGVTAGKTAEMEVVVVPSLPKQSHLYTAADEVINSLLDLRLEKWGLPPFEDWVEGTLPVDPWYIGGPVVKGFGRGSKVLGIPTANLSTEGYSDLLSEYPAGVYFGWAGLSARGVFKMVMSIGWNPYFNNKEKAIEPWLLHDFNEDFYGEELRLVIVGYIRPEVNFSSLESLVAKIHEDRRVAERALDLPLYSSFKNDSYLRSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
