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Report for Sequence Feature Glyma.07g189500

Feature Type:gene_model
Chromosome:Gm07
Start:35711659
stop:35715462
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g189500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11260.1AT sugar transporter 1 JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity JGI N/AIEA
KOG0254 KOG Predicted transporter (major facilitator superfamily) JGI N/AIEA
PTHR24063Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24063:SF116Panther JGI N/AIEA
PF00083PFAM Sugar (and other) transporter JGI N/AIEA

Proteins Associated with Glyma.07g189500
LocusGene SymbolProtein Name
STP1 monosaccharide transporter

Expression Patterns of Glyma.07g189500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g189500
ParalogEvidenceComments
Glyma.08g059700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g189500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g30880 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g189500
>Glyma.07g189500.1 sequence-type=CDS polypeptide=Glyma.07g189500.1.p locus=Glyma.07g189500 ID=Glyma.07g189500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTGCGGTCGGAGGTATAAACACCGGAGGGGGCAAGGAGTACCCTGGAAGCCTCACTCTATTTGTGACGGTAACATGTATAGTTGCAGCCATGGGTGGTTTAATCTTCGGTTACGATATCGGAATTTCAGGTGGAGTGACGTCCATGGATCCGTTTCTGCTCAAGTTTTTTCCGTCAGTGTTCCGGAAGAAAAACTCCGACAAAACGGTGAACCAGTACTGCCAATACGACAGCCAGACACTGACGATGTTCACGTCGTCCTTGTACCTCGCCGCTTTGCTGTCGTCGTTGGTTGCCGCCACCGTCACGCGTAAATTCGGCCGGAAACTCTCCATGCTTTTCGGAGGCTTGCTTTTCCTCGTCGGTGCCCTCATCAACGGTTTCGCCCAACACGTTTGGATGTTAATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGCTTCGCCAATCAGTCTGTGCCACTCTACCTATCTGAAATGGCTCCATACAAATATAGAGGAGCATTGAACATTGGCTTTCAGTTGTCCATCACTGTTGGTATCCTTGTGGCCAATGTGTTGAACTATTTCTTTGCTAAAATCAAAGGTGGTTGGGGATGGAGGTTGAGTTTGGGAGGTGCTATGGTCCCTGCCCTTATAATCACAGTAGGATCACTAGTCCTTCCAGACACTCCCAATTCCATGATTGAAAGGGGTGATCGCGAGAAGGCCAAGGCTCAGCTTCAGAGAATTCGCGGCATCGACAATGTTGATGAAGAGTTCAATGACCTTGTGGCAGCAAGTGAATCCTCTAGCCAAGTGGAGCACCCTTGGAGGAACTTGTTGCAAAGAAAGTACAGACCCCACCTCACCATGGCAGTGTTGATTCCATTCTTCCAGCAACTCACTGGAATCAATGTCATCATGTTTTACGCGCCGGTCCTGTTCAGCTCCATCGGGTTTAAGGATGATGCTGCTCTAATGTCAGCTGTGATCACCGGCGTTGTTAATGTTGTCGCAACTTGTGTCTCAATTTATGGTGTTGACAAGTGGGGTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAGGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCAGGTGATTTGCCAAAGTGGTATGCAATTGTTGTGGTTCTCTTCATTTGCATTTATGTATCAGCATTTGCCTGGTCATGGGGTCCCCTAGGTTGGTTGGTGCCTAGTGAGATCTTTCCCTTGGAGATTCGTTCGGCTGCTCAGAGTATCAATGTGTCGGTGAACATGCTTTTCACTTTCTTGATTGCACAAGTCTTCTTGACAATGCTTTGCCACATGAAGTTCGGCTTGTTCCTCTTCTTTGCCTTCTTCGTGTTGATCATGACATTCTTCGTCTACTTCTTCTTGCCCGAAACAAAGGGCATTCCAATTGAAGAAATGGGGCAGGTTTGGCAGGCACACCCCTTCTGGTCCAGATTCGTGGAGCATGATGATTATGGCAATGGTGTTGAGATGGGAAAGGGAGCTATTAAAGAAGTGTAG
Predicted protein sequences of Glyma.07g189500
>Glyma.07g189500.1.p sequence-type=predicted peptide transcript=Glyma.07g189500.1 locus=Glyma.07g189500 ID=Glyma.07g189500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAVGGINTGGGKEYPGSLTLFVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLLKFFPSVFRKKNSDKTVNQYCQYDSQTLTMFTSSLYLAALLSSLVAATVTRKFGRKLSMLFGGLLFLVGALINGFAQHVWMLIVGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITVGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGDREKAKAQLQRIRGIDNVDEEFNDLVAASESSSQVEHPWRNLLQRKYRPHLTMAVLIPFFQQLTGINVIMFYAPVLFSSIGFKDDAALMSAVITGVVNVVATCVSIYGVDKWGRRALFLEGGVQMLICQAVVAAAIGAKFGTDGNPGDLPKWYAIVVVLFICIYVSAFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMLFTFLIAQVFLTMLCHMKFGLFLFFAFFVLIMTFFVYFFLPETKGIPIEEMGQVWQAHPFWSRFVEHDDYGNGVEMGKGAIKEV*






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