SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.07g187600

Feature Type:gene_model
Chromosome:Gm07
Start:35502527
stop:35506056
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g187600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61680.1AT terpene synthase 14 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0010333GO-mf terpene synthase activity EnsemblGenomesN/AIEA
GO:0010333GO-mf terpene synthase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF01397PFAM Terpene synthase, N-terminal domain JGI N/AIEA
PF03936PFAM Terpene synthase family, metal binding domain JGI N/AIEA
PWY-5434SoyCyc9 (3E)-4,8-dimethylnona-1,3,7-triene biosynthesis Plant Metabolic Network ISS
GN7V-47989SoyCyc9-rxn (3S,6E)-nerolidol synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.07g187600
LocusGene SymbolProtein Name
TPS4 terpene synthase 4

Expression Patterns of Glyma.07g187600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g187600
ParalogEvidenceComments
Glyma.08g061600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g187600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g30700 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g187600
>Glyma.07g187600.1 sequence-type=CDS polypeptide=Glyma.07g187600.1.p locus=Glyma.07g187600 ID=Glyma.07g187600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGCATTTCAAAACGTGCATTTTTTCTTTCAAACCTCATCAAATTATGACAACAAAGGCTCAGCTTTCTCAAAGCTTCAATCCTGCTAAACTTGATTCTCTTCACATTGCCAACAAATGGAACATTGTTCAAGAAGAAAGATCTAGCGCATTATTCACAAAAACTGGAGATCTCATCAGCATTAATCACTCAGACAAACTGGAGGTGGTCAAGAATGAATTTATGAACACTGTGGGTGAAAATTCATTAAGAGGTTTGTACATGATTGATGCCATGCAGCGCCTAAATATTGATTACCACTTCCAAGAGGAAATTGAAGAATTCCTAAGGAGGCAATATGTGAATTCTACTACTATTGCGGGTGGTTATTATGGTGATGATATTCATGAGATTGCACTTCGCTTCAGGCTATTGAGACAACAAGGTTTCTTTGTGCCCGAAGAGGTGTTTCACAAGTTCACAAACAAGGAGGGAAAGTTCAACCAAAAACTTGGTGAAAATATAAAGGGAATGGTAGAGTTATATGAAGCCTCACCGTTAGGCATAGCAGGGGAAGACACACTTGCTGAAGCTGGTGAATTTAGTGGCCCAGTCCTAAAGGAAAAGTTGGATTGTATAGATATCCATAATCTTGAAGCTAAGTTTGTGAAGAGAACCTTAGAACAACCTTTCCACAAAAGCTTGCCCATGTTTACTGCTAGAAATTTCTTTGGTGATTTCGATGCCACGAATACATGGTTAGGTTCCTTAAAAGAAGTGGCGAAAATGGATTTCAGTTTGCTGCAATGCATGTACCATCGAGAGATTACTCAAATTTCAAACTGGTGGACAGGGCTTGGTTTAGCCAACGAGTTAATGTATGCAAGAAATCAACCACTTAAATGGTACATTTGGTCATTGGCATGTTTCACGGATCCTACTTTGTCAGAGGAAAGGGTTGAGCTCACAAAACCAATATCTTTAATCTACATAATAGATGACATTTTCGATGTTTATGGGACACTAGATGAATTAACTCTTTTCACAGAAGCTGTTTGCAGATGGGATATTACAGCAATTGAGCAGCTACCAGATTACATGAAGGCATGTTTCGGAGTTCTCTACAATCTCACAAATGAAATCAGCTCCAAGGTCTATCAGAAGCACGGGTGGAACCCCATAGACTCTCTACAACATGCGTGGAAGAGTTTGTGCAAAGCCTTCCTAGTTGAAGCAAAATGGTTTGCTTCTGGGAACTTGCCCAGTGCCGAAGAATACTTAAAGAATGGAATAGTAAGCTCTGGAGTGCATATTGTGATGGTTCATGCTTTCTTTCTTTTGGGGCATGGATTAACAGAGGAAAATATTAAGATCATAGACAGAAACCCTGACATCATTTCTTCCCCCGCAACAATTCTTCGACTTTGGGATGACTTGGGAAATGCAGAGGACGAGAATCAACAAGGCAATGATGGATCGTACGTGAATTGTCTCATGATGGATCACCCACACTACACGACGAGAACAGCAAGAAAAAGGGTGATGAGTAAGATCTCCGATGCATGGAAGAGCCTCAACCAAGAGTGCTTGTTTGGTAACCATTTCCATTCGACATTCACTAAGGCCTCACTCAATCTTGCAAGGATGGTACCATTGATGTATAGTTATGACGACAAACAGTCCCTTCCAGGGCTAGAGGAGCAAGTCAAGTCATTGCTTTATGATGATTTTCTTTAA
Predicted protein sequences of Glyma.07g187600
>Glyma.07g187600.1.p sequence-type=predicted peptide transcript=Glyma.07g187600.1 locus=Glyma.07g187600 ID=Glyma.07g187600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALHFKTCIFSFKPHQIMTTKAQLSQSFNPAKLDSLHIANKWNIVQEERSSALFTKTGDLISINHSDKLEVVKNEFMNTVGENSLRGLYMIDAMQRLNIDYHFQEEIEEFLRRQYVNSTTIAGGYYGDDIHEIALRFRLLRQQGFFVPEEVFHKFTNKEGKFNQKLGENIKGMVELYEASPLGIAGEDTLAEAGEFSGPVLKEKLDCIDIHNLEAKFVKRTLEQPFHKSLPMFTARNFFGDFDATNTWLGSLKEVAKMDFSLLQCMYHREITQISNWWTGLGLANELMYARNQPLKWYIWSLACFTDPTLSEERVELTKPISLIYIIDDIFDVYGTLDELTLFTEAVCRWDITAIEQLPDYMKACFGVLYNLTNEISSKVYQKHGWNPIDSLQHAWKSLCKAFLVEAKWFASGNLPSAEEYLKNGIVSSGVHIVMVHAFFLLGHGLTEENIKIIDRNPDIISSPATILRLWDDLGNAEDENQQGNDGSYVNCLMMDHPHYTTRTARKRVMSKISDAWKSLNQECLFGNHFHSTFTKASLNLARMVPLMYSYDDKQSLPGLEEQVKSLLYDDFL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo