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Report for Sequence Feature Glyma.07g157800

Feature Type:gene_model
Chromosome:Gm07
Start:19488288
stop:19493877
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g157800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G66654.1AT Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0881 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI N/AIEA
PTHR11071Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR11071:SF20Panther JGI N/AIEA
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI N/AIEA

Proteins Associated with Glyma.07g157800
LocusGene SymbolProtein Name
CYP49 peptidyl-prolyl cis-trans isomerase CYP49

Expression Patterns of Glyma.07g157800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g157800 not represented in the dataset
Glyma.07g157800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g157800
ParalogEvidenceComments
Glyma.20g005600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g157800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g19441 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g157800
>Glyma.07g157800.2 sequence-type=transcript locus=Glyma.07g157800 ID=Glyma.07g157800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGGTTTTGTTTATTTCCTCTATGTTGAACAAGTTTTGTTTTTGAGACCAAAATCTTAGTTGTTGCAAGTTGCAACTGTCTATGACTTGGGAGTTGGGGAGGAAGCGTTTTTGCTAAATTGGATGGCTAAATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGAAGGCATCTCTGCCCGAATCAATGGGATAAATATTTCTCATACTTTGCTGATAGCCTATTGGCTTATTTGTTAAAATCCTTTCTACACAGATGATGAACCTCAAGGATTTCACCTTAGGTTTGTCAATGAAACGTTTGAGCTTTGATGCAGTTTTAGCTACATGTTTCAGTTGCTCATTCAGTGATTATTATGAAATCTCGTTTCTTTCTCCTTTCTATCATATTGTTTGGTCTCTTTTGATGTGGCAGGATGTATGTAGGAATGTCTATTGCAACTTGCCTGGTTGGTGCTATCACCTCTTCTATTTTATTTTGGCATTACTCTTCATTTATAGAGTTTCAATTGATGACTTTTTTAGTCTTTCTGGGCCGAGCCAACCAATATTGGCTTTGTAATCTATTTTGTAATGATGCTCAATTCATATTTTCATTTGGTTATATTAG
Coding sequences of Glyma.07g157800
>Glyma.07g157800.1 sequence-type=CDS polypeptide=Glyma.07g157800.1.p locus=Glyma.07g157800 ID=Glyma.07g157800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGA

>Glyma.07g157800.2 sequence-type=CDS polypeptide=Glyma.07g157800.2.p locus=Glyma.07g157800 ID=Glyma.07g157800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGA
Predicted protein sequences of Glyma.07g157800
>Glyma.07g157800.1.p sequence-type=predicted peptide transcript=Glyma.07g157800.1 locus=Glyma.07g157800 ID=Glyma.07g157800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGMIKPQALLQQSKRKKGPSRISATTIIFYTLTLVMLVFILFVTYRHWSNRTRLQQERYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKVFDLFITTAPIPDLNEKLIVFGRVIKGQDIVQEIEEVDTDEHYQPKVSIGILDVALKQLE*

>Glyma.07g157800.2.p sequence-type=predicted peptide transcript=Glyma.07g157800.2 locus=Glyma.07g157800 ID=Glyma.07g157800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGMIKPQALLQQSKRKKGPSRISATTIIFYTLTLVMLVFILFVTYRHWSNRTRLQQERYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKVFDLFITTAPIPDLNEKLIVFGRVIKGQDIVQEIEEVDTDEHYQPKVSIGILDVALKQLE*






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