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Report for Sequence Feature Glyma.07g156300

Feature Type:gene_model
Chromosome:Gm07
Start:19207591
stop:19208625
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g156300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20090.1AT Uncharacterised protein family (UPF0041) JGI N/AIEA
GO:0006850GO-bp mitochondrial pyruvate transmembrane transport EnsemblGenomesN/AIEA
GO:0006850GO-bp mitochondrial pyruvate transport JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031305GO-cc integral component of mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0050833GO-mf pyruvate transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1590 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR14154Panther UPF0041 BRAIN PROTEIN 44-RELATED JGI N/AIEA
PTHR14154:SF3Panther MITOCHONDRIAL PYRUVATE CARRIER 1 JGI N/AIEA
PF03650PFAM Uncharacterised protein family (UPF0041) JGI N/AIEA

Expression Patterns of Glyma.07g156300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g156300
ParalogEvidenceComments
Glyma.18g206700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g156300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g19230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g156300
>Glyma.07g156300.1 sequence-type=CDS polypeptide=Glyma.07g156300.1.p locus=Glyma.07g156300 ID=Glyma.07g156300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTAATTTCCGAGCATTCTTGAACAGTCCTGTTGGTCCAAAAACAACACATTTCTGGGGACCTATTGCCAATTGGGGATTTGTTGCTGCCGGTTTGATAGACATGAAAAAACCTCCAGAAATGATCTCTGGCAACATGACAGCAGTTATGTGCGTCTATTCAGCATTGTTCATGAGATTTGCATGGATGGTTCAACCGCGAAACTATCTGCTTCTTGCTTGCCATGCATCCAACGAGGCCGTACAAATACGCCAACTCACCCGTTGGGCAAAGGGGAATGGGTACCTTTCTGTGAAGAAGGAAGGAGCTTCGTCCAAGTAA
Predicted protein sequences of Glyma.07g156300
>Glyma.07g156300.1.p sequence-type=predicted peptide transcript=Glyma.07g156300.1 locus=Glyma.07g156300 ID=Glyma.07g156300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASNFRAFLNSPVGPKTTHFWGPIANWGFVAAGLIDMKKPPEMISGNMTAVMCVYSALFMRFAWMVQPRNYLLLACHASNEAVQIRQLTRWAKGNGYLSVKKEGASSK*






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