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Report for Sequence Feature Glyma.07g152200

Feature Type:gene_model
Chromosome:Gm07
Start:18492463
stop:18496077
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g152200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08950.1AT electron transport SCO1/SenC family protein JGI N/AIEA
GO:0006825GO-bp copper ion transport EnsemblGenomesN/AIEA
GO:0006878GO-bp cellular copper ion homeostasis EnsemblGenomesN/AIEA
GO:0008535GO-bp respiratory chain complex IV assembly EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0016209GO-mf antioxidant activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2792 KOG Putative cytochrome C oxidase assembly protein JGI N/AIEA
PTHR12151Panther SCO1/SENC JGI N/AIEA
PF02630PFAM SCO1/SenC JGI N/AIEA

Expression Patterns of Glyma.07g152200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g152200
ParalogEvidenceComments
Glyma.18g203300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g152200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g18460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g152200
>Glyma.07g152200.2 sequence-type=transcript locus=Glyma.07g152200 ID=Glyma.07g152200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTGCGATGGTTTAAGGTTAAGGTTTTCACATAATTCCTCTAATGGCGTACATCGTATCCAGCAAGGTTAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCATGGCAGACCCTCCACGCTTTTACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTCACCAGGTTGGGAATCAAGGTTATGGAAATGGGTCGTTGGGGTTGTGCCCAAGGcttctatcttcttcttcttcttctgatgcttctgctgctAATGTTAGTGGAGAAAAACCAGCATTGGATTCAGATCAATCTGCAAAAGATGGTTCTGGCAAAGAGAGAGAGTCTGGGAGTGGAGGAGGACAGGATCAGAAAAGTGATGCTGGGAAATCTGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGTTGGTTCTCACTGGAGCTGGACTAGTGTTCTACTACGACAGGGAAAAGAAACGACATATCGAAGGGATACGTACTAATACGGAGGCTGTTAAGCAGGGACCTTCTGCAGGAAAAGCTGCAATTGGGGGTCCATTTTGCCTTATCAACCATCACGGAAAACATGTAACTGAAAAGGATTTCATGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCGGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTTCCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAGAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATTGTTATATGATCTAATCTTTGAAATATTTCAATGGCAAGGATGAGAGTAGAAATAGTGGAGATACTTGATGAGTCCTGAGATGGAATTCGTAAAGTTTTTTGGCAAGAACAATGATGTTGACTCACTTGCTGATGGTGTTATTAAAGAGGTAACGCAGCATAAGAAATAACCTGCACAACCAGGCTATTGATACCCTCATTTCTTTATCGTGGAAACGAAATTGTCAATGAATTTTGGCCTTGTGGTAGTAAACTACACCAGCATGTCTGGTTTTACAAAGCAACTTATTGGTGTCATTGTTTCAATGTTGTTGTTTAGCATTGTGCTTGAATTATTTTTTTTGGTGATATGTTATTGGTGTATTTTGAGATGCAACAACATTACAATTGTCATGTTCAACATGCCTTACATCAGAGGTGGCATCTATAATAAGAAATACCATGGTTTATATTGATGATATATTAAATTACGATCTTTCTACAGGGAAGAGCTTACAATTAAAATGAATCTGATTGGTTTC
Coding sequences of Glyma.07g152200
>Glyma.07g152200.1 sequence-type=CDS polypeptide=Glyma.07g152200.1.p locus=Glyma.07g152200 ID=Glyma.07g152200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTACATCGTATCCAGCAAGGTTAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCATGGCAGACCCTCCACGCTTTTACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTCACCAGGTTGGGAATCAAGGTTATGGAAATGGGTCGTTGGGGTTGTGCCCAAGGCTTCTATCTTCTTCTTCTTCTTCTGATGCTTCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATTGGATTCAGATCAATCTGCAAAAGATGGTTCTGGCAAAGAGAGAGAGTCTGGGAGTGGAGGAGGACAGGATCAGAAAAGTGATGCTGGGAAATCTGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGTTGGTTCTCACTGGAGCTGGACTAGTGTTCTACTACGACAGGGAAAAGAAACGACATATCGAAGGGATACGTACTAATACGGAGGCTGTTAAGCAGGGACCTTCTGCAGGAAAAGCTGCAATTGGGGGTCCATTTTGCCTTATCAACCATCACGGAAAACATGTAACTGAAAAGGATTTCATGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCGGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTTCCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAGAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATTGTTATATACTTGATGAGTCCTGAGATGGAATTCGTAAAGTTTTTTGGCAAGAACAATGATGTTGACTCACTTGCTGATGGTGTTATTAAAGAGGTAACGCAGCATAAGAAATAA

>Glyma.07g152200.2 sequence-type=CDS polypeptide=Glyma.07g152200.2.p locus=Glyma.07g152200 ID=Glyma.07g152200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTACATCGTATCCAGCAAGGTTAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCATGGCAGACCCTCCACGCTTTTACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTCACCAGGTTGGGAATCAAGGTTATGGAAATGGGTCGTTGGGGTTGTGCCCAAGGCTTCTATCTTCTTCTTCTTCTTCTGATGCTTCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATTGGATTCAGATCAATCTGCAAAAGATGGTTCTGGCAAAGAGAGAGAGTCTGGGAGTGGAGGAGGACAGGATCAGAAAAGTGATGCTGGGAAATCTGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGTTGGTTCTCACTGGAGCTGGACTAGTGTTCTACTACGACAGGGAAAAGAAACGACATATCGAAGGGATACGTACTAATACGGAGGCTGTTAAGCAGGGACCTTCTGCAGGAAAAGCTGCAATTGGGGGTCCATTTTGCCTTATCAACCATCACGGAAAACATGTAACTGAAAAGGATTTCATGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCGGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTTCCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAGAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATTGTTATATGA
Predicted protein sequences of Glyma.07g152200
>Glyma.07g152200.1.p sequence-type=predicted peptide transcript=Glyma.07g152200.1 locus=Glyma.07g152200 ID=Glyma.07g152200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYIVSSKVNQFRYSTRLLFSHLLRHGRPSTLLPPFSSHLQPLHHPHQVGNQGYGNGSLGLCPRLLSSSSSSDASAANVSGEKPALDSDQSAKDGSGKERESGSGGGQDQKSDAGKSVRGGPVSWLSFLLLVLTGAGLVFYYDREKKRHIEGIRTNTEAVKQGPSAGKAAIGGPFCLINHHGKHVTEKDFMGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEVKNVARAYRVYYMKTAEEDSDYLVDHSIVIYLMSPEMEFVKFFGKNNDVDSLADGVIKEVTQHKK*

>Glyma.07g152200.2.p sequence-type=predicted peptide transcript=Glyma.07g152200.2 locus=Glyma.07g152200 ID=Glyma.07g152200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYIVSSKVNQFRYSTRLLFSHLLRHGRPSTLLPPFSSHLQPLHHPHQVGNQGYGNGSLGLCPRLLSSSSSSDASAANVSGEKPALDSDQSAKDGSGKERESGSGGGQDQKSDAGKSVRGGPVSWLSFLLLVLTGAGLVFYYDREKKRHIEGIRTNTEAVKQGPSAGKAAIGGPFCLINHHGKHVTEKDFMGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEVKNVARAYRVYYMKTAEEDSDYLVDHSIVI*






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