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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G05170.1 | AT | vacuolar protein sorting 11 | JGI | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | JGI | N/A | IEA |
| GO:0006904 | GO-bp | vesicle docking involved in exocytosis | EnsemblGenomes | N/A | IEA |
| GO:0007032 | GO-bp | endosome organization | EnsemblGenomes | N/A | IEA |
| GO:0007040 | GO-bp | lysosome organization | EnsemblGenomes | N/A | IEA |
| GO:0016192 | GO-bp | vesicle-mediated transport | EnsemblGenomes | N/A | IEA |
| GO:0016192 | GO-bp | vesicle-mediated transport | JGI | N/A | IEA |
| GO:0035542 | GO-bp | regulation of SNARE complex assembly | EnsemblGenomes | N/A | IEA |
| GO:0005768 | GO-cc | endosome | EnsemblGenomes | N/A | IEA |
| GO:0030897 | GO-cc | HOPS complex | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0030674 | GO-mf | protein binding, bridging | EnsemblGenomes | N/A | IEA |
| KOG2114 | KOG | Vacuolar assembly/sorting protein PEP5/VPS11 | JGI | N/A | IEA |
| PTHR23323 | Panther | VACUOLAR MEMBRANE PROTEIN RELATED | JGI | N/A | IEA |
| PTHR23323:SF24 | Panther | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG | JGI | N/A | IEA |
| PF00637 | PFAM | Region in Clathrin and VPS | JGI | N/A | IEA |
| PF12451 | PFAM | Vacuolar protein sorting protein 11 C terminal | JGI | N/A | IEA |
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Glyma.07g119500 not represented in the dataset |
Glyma.07g119500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g104400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g13120 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g119500.1 sequence-type=CDS polypeptide=Glyma.07g119500.1.p locus=Glyma.07g119500 ID=Glyma.07g119500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGGCGCGAAGTGCGCGGTTCCTGAGGCCGACGAAGACGACAGCGGCGTCATCGCAGCGGAGAGGAAGATCGAGTGCTGTTCGAGCGGTAGGGGCAAAGTCGTCACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGAGGCCTCAAGTTTAACTACGCTTTCCAGCCTCACTCCTCTTCCGTTCTCTTTCTTCAGCAACTCAAGCAACGCAACTTTCTGGTAACAATTGGGGAGGATGAACAGCTTACTCCCCAGCAAACAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAATCGGAGAGTTCGAGCACGACAAGTCCTGATTGCGTTGGGATATTGCGAATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCATTTTTGGTTTTAGAAGAAGTGCCACCTATACTACTCATAGCTATTGGCTTGGACAGTGGTTCTATTTACTGCATCAAAGGAGACATTGCACGGGAGCGTATCACTCGTTTCAAGCTTCAGGTGGAAAACAACCATTCGGACAAAACTCTTTCTGCTGTAACTGGACTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGTTGTGACTCCAAGTTCAGTGAGCTTGTTTTCGTTGCATGATCAACCGCCAAGAAGGCAGACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTGCAATGAGTGATCGATCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCTCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGCTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTACAGACTCAGCAAGCAGATGCAGCAGCTACTGCTGAAGTGTTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGGATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACTAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAAGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATAGAGCACAAGCCAGTGGAGACAATTCAGATTCTCATAAGGCTTTGCACAGAAGATGGTGACAAAAGAGGACGCTCAAATGGAGTGTACATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATCTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCACAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCACAAGTTAATGATGGTGGAAATTACCTTAATGGAGCATCAGCAAAAACCATGATTTTAAGTGCTCAATCTAATGGAAACATTGGTGATCACAAAAGTTCAGAGCAGGAAAAGAACCATCTCGAAAGACTTGAAAAGGGTTTACGCTTGCTTAAGACTGCATGGCCTCCAGAGACAGAACATCCACAATATGATGTTGATTTAGCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAGAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAGGCACACGATCATGAGGGGCTAATTGCATGCTGCAAGAGGCTGGGGGATTCTGTTAAAGGAGGGGACTCATCTCTTTGGGCAGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATGATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACGCTTTCTGTGCTCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGGCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTCGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATTTGCCTGCCGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGTGATAATGAAAAAGAATGCCCTCAGTGTGCACCTGAATATAGGTCTGTCTTAGAAATGAAAAAAAATTTAGAGCAAAATTCTAAGGATCAGGACAGATTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGTCCCGTATCCGGAACTGCATCATCCAGTAGTGGTTTCTAA
>Glyma.07g119500.1.p sequence-type=predicted peptide transcript=Glyma.07g119500.1 locus=Glyma.07g119500 ID=Glyma.07g119500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MYQWRKFEFFEEKYGAKCAVPEADEDDSGVIAAERKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQQTALCLKVFDLDKMQSESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDSGSIYCIKGDIARERITRFKLQVENNHSDKTLSAVTGLGFRVDGQSLQLFVVTPSSVSLFSLHDQPPRRQTLDQIGSGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGDKRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGASAKTMILSAQSNGNIGDHKSSEQEKNHLERLEKGLRLLKTAWPPETEHPQYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDSSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPMIVLQTLSRNPCLTLSVLKDYIARKLERESKMIEEDRQAIEKYQEDTLAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPQCAPEYRSVLEMKKNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPVSGTASSSSGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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