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Report for Sequence Feature Glyma.07g119100

Feature Type:gene_model
Chromosome:Gm07
Start:13580146
stop:13582594
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g119100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44740.1AT cyclin p4;1 JGI N/AIEA
GO:0000079GO-bp regulation of cyclin-dependent protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0000079GO-bp regulation of cyclin-dependent protein serine/threonine kinase activity JGI N/AIEA
GO:0019901GO-mf protein kinase binding EnsemblGenomesN/AIEA
GO:0019901GO-mf protein kinase binding JGI N/AIEA
KOG1674 KOG Cyclin JGI N/AIEA
PTHR15615Panther UNCHARACTERIZED JGI N/AIEA
PF08613PFAM Cyclin JGI N/AIEA

Expression Patterns of Glyma.07g119100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g119100 not represented in the dataset
Glyma.07g119100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g119100
ParalogEvidenceComments
Glyma.03g107800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g119100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g13200 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g119100
>Glyma.07g119100.1 sequence-type=CDS polypeptide=Glyma.07g119100.1.p locus=Glyma.07g119100 ID=Glyma.07g119100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAGGAGGAGAGTCCAAGTGTGATGCCAAAAGTGATCACCTTCCTCTCCTCTCTTCTTGAAAGGGTGGCTGAGTCAAATGATCACAACCAACAGCACCAGAAGATCTCAGTGTTCCATGGCTTGACAAGGCCAAACATCTCAATTCATAGCTACCTTGAGAGAATCTTCAAGTACGCCAACTGCAGCCCCTCGTGCTTCGTCGTCGCCTACGTCTACCTCGACCGATTCACTCAGAGACAACCCTCCCTTCCCATCAACACCTTCAACGTGCACCGTTTGCTGATCACTAGTGTCATGGTAGCTGCCAAGTTCATGGATGACATGTACTACAACAATGCTTACTATGCAAAAGTTGGGGGAATCACCAAAATAGAGATGAATTTTCTTGAGTTGGATTTCCTGTTTGGTTTGGGTTTCCATTTAAATGTAACCCCAGGCACCTTCCAAGCCTACTGTGTCAATCTCCAAAGAGAAATGTTGTTGATCCAACAACCTCTAAATTTTGCAGATTCCACCCTAAATTTAGGAAAATCACTAAAGGCCCACTTGTGCTTCAATGAGGATGAATCTTCTCATCAAAAGCAACAACAGCTAGCGGTTTGA
Predicted protein sequences of Glyma.07g119100
>Glyma.07g119100.1.p sequence-type=predicted peptide transcript=Glyma.07g119100.1 locus=Glyma.07g119100 ID=Glyma.07g119100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEESPSVMPKVITFLSSLLERVAESNDHNQQHQKISVFHGLTRPNISIHSYLERIFKYANCSPSCFVVAYVYLDRFTQRQPSLPINTFNVHRLLITSVMVAAKFMDDMYYNNAYYAKVGGITKIEMNFLELDFLFGLGFHLNVTPGTFQAYCVNLQREMLLIQQPLNFADSTLNLGKSLKAHLCFNEDESSHQKQQQLAV*






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