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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80600.1 | AT | HOPW1-1-interacting 1 | JGI | N/A | IEA |
| GO:0006525 | GO-bp | arginine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0008483 | GO-mf | transaminase activity | EnsemblGenomes | N/A | IEA |
| GO:0008483 | GO-mf | transaminase activity | JGI | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | JGI | N/A | IEA |
| GO:0042802 | GO-mf | identical protein binding | EnsemblGenomes | N/A | IEA |
| KOG1401 | KOG | Acetylornithine aminotransferase | JGI | N/A | IEA |
| PTHR11986 | Panther | AMINOTRANSFERASE CLASS III | JGI | N/A | IEA |
| PTHR11986:SF19 | Panther | JGI | N/A | IEA | |
| PF00202 | PFAM | Aminotransferase class-III | JGI | N/A | IEA |
| ARGSYN-PWY | SoyCyc9 | L-arginine biosynthesis I (via L-ornithine) | Plant Metabolic Network | ISS | |
| ARGSYNBSUB-PWY | SoyCyc9 | L-arginine biosynthesis II (acetyl cycle) | Plant Metabolic Network | ISS | |
| GLUTORN-PWY | SoyCyc9 | L-ornithine biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-47035 | SoyCyc9-rxn | acetylornithine transaminase | Plant Metabolic Network | ISS |
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Glyma.07g118300 not represented in the dataset |
Glyma.07g118300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g13320 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g118300.1 sequence-type=CDS polypeptide=Glyma.07g118300.1.p locus=Glyma.07g118300 ID=Glyma.07g118300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTTCATTTTACATGTCTCTGAACCCTTCAATTTCTCAATCGTGTTACAAACCCAAGCAATTTTTCAATTTGGAGAGAGAGAGTACTTTGGTGGGAAGAAGTCCTGTTATTCAGATTAGATGCCGGAGGGTTGTGAGTGCGTGTCTTAACGTGGATGTTGATGCACCTGATAGTGGGAAGACAGCATTGGAGAAAACCAAGGATGTGATCGAGATGGAAGGGAAGTTCTTGGTGGGGACATATGCAAGAACACCGGTGGTGCTTGAGAGGGGGGAAGGTTGCAAATTGTATGATGTTGAAGGGAGAGAATATTTAGATTTGAGTGCTGGGATTGCTGTCAATGCACTAGGGCACGGGGATGCAGATTGGTTGAAAGCTGTTGTTGAGCAAGCCGGTACTCTTACTCATACCAGCAACATATTCCACACAATACCTCAGGTAGAACTTGCGAAGCGTCTTGTGGCTTCTTCTTTTGCTGATCGTGTGTTCTTTGCAAATTCTGGAACCGAAGCGAATGAAGCAGCTATTAAATTTGCAAGAAAATATCAGAGAGACACAACTACTGACGGCAAAGAGCCGGCAACAGAGTTCATAGCTTTTAGTAACTGCTTCCATGGGAGAACCCTGGGTGCACTTGCTTTGACAAGTAAAGTGCAATACAGGACACCTTTTGAACCTGTTATGCCTGGAGTGACCTTTCTAGAATATGGAAATGCTCAGGCCGCAGTAGAATTAATTAAGCAGGGCAAGATAGCTGCAGTTTTTGTAGAACCCATTCAAGGAGAAGGTGGAATTTACAGTGCCACAAAAGAATTTCTACAGTCTCTGCATAGTGCTTGTGATGAAGCTGGGGCACTTCTCGTTTTTGATGAGGTTCAATGTGGTTTAGGTAGATCAGGGTTTCTTTGGGCCCATGAGGCATTTGGTGTCTTCCCGGATATGATGACCCTTGCAAAGCCTCTTGCTGGAGGCCTACCTATTGGAGCAGTCCTAGTGACTGAGAGAGTTGCTTCTTCTATAAATTATGGTGACCATGGAAGCACTTTTGCTGGAAACCCTCTTGTTTGTAGTGCTGCCCTTGCTGTTTTTGATAAAATATCAAAACCTGATTTCCTGTCGTCTGTATCTAAGAAAGGCCTCTACTTCAAAGAATTACTCAAGCAGAAGTTAGGAGGAAACCAACATGTGAAAGAAATTCGTGGTGTTGGGCTAATCATAGGAATAGATTTAGATGTACCTGCCTCACCCTTTGTCGATGCATGCCGAAATTCTGGCCTTTTAGTATTAACTGCTGGAAAAGGAAATGTTGTCAGGCTTGTCCCACCATTGATCATAACAGAGAAAGAGCTCGAGCTAGCGGCCGACATTTTGTGCAAAACTTTACCAGTTCTTGATAACTAG
>Glyma.07g118300.1.p sequence-type=predicted peptide transcript=Glyma.07g118300.1 locus=Glyma.07g118300 ID=Glyma.07g118300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSFYMSLNPSISQSCYKPKQFFNLERESTLVGRSPVIQIRCRRVVSACLNVDVDAPDSGKTALEKTKDVIEMEGKFLVGTYARTPVVLERGEGCKLYDVEGREYLDLSAGIAVNALGHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADRVFFANSGTEANEAAIKFARKYQRDTTTDGKEPATEFIAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFLEYGNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLHSACDEAGALLVFDEVQCGLGRSGFLWAHEAFGVFPDMMTLAKPLAGGLPIGAVLVTERVASSINYGDHGSTFAGNPLVCSAALAVFDKISKPDFLSSVSKKGLYFKELLKQKLGGNQHVKEIRGVGLIIGIDLDVPASPFVDACRNSGLLVLTAGKGNVVRLVPPLIITEKELELAADILCKTLPVLDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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