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Report for Sequence Feature Glyma.07g104800

Feature Type:gene_model
Chromosome:Gm07
Start:10160253
stop:10164392
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g104800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14760.2AT KNOX Arabidopsis thaliana meinox JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF03790PFAM KNOX1 domain JGI N/AIEA
PF03791PFAM KNOX2 domain JGI N/AIEA

Proteins Associated with Glyma.07g104800
LocusGene SymbolProtein Name
FCL1 homeobox protein knotted-1-like 1

Expression Patterns of Glyma.07g104800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g104800 not represented in the dataset
Glyma.07g104800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g104800
ParalogEvidenceComments
Glyma.09g172800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g104800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g11847 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g104800
>Glyma.07g104800.1 sequence-type=CDS polypeptide=Glyma.07g104800.1.p locus=Glyma.07g104800 ID=Glyma.07g104800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATCTGAGAGGCCTAGCACTATTAATGAGACCTACAAACAACAACAAGAACTAGAAGAAGAAGAAGAAGAAGATGATGATGATGATAATGAAGAAGAAGAAGAAGAAGAAGAAAACAATGAGATCCTCAAGAGGAGAATCTCCAACCACCCTCTCTATGGTCTGCTGGTTGAAGCTCACTTGGACTGTTTGAAGGTTGGTGACATTTCCAACTTGGAGAGAGAGCTGAAGATAGATCAGATGCAAGCAACGGAGAAGCAAAACTTGGGCATGTTCAGCCAATCTGAGCTTGATCTCTTCATGGAAGCATATTGTTTGGCACTTGGCAAGCTTAAAGAAGCAATGGTGGAACCACAACAGAAATCCATGGCTTTCATAAACAACATGCATTCACAACTTAGGGAGCTCACTAAGGCAACCTTGCCTGCACCTAATAATGCTGAACCAGCTGCAGCAACTACATCTTCTACTAGTGAGTCCAAATTCAGAAGAAAGCCCACAATTTAG
Predicted protein sequences of Glyma.07g104800
>Glyma.07g104800.1.p sequence-type=predicted peptide transcript=Glyma.07g104800.1 locus=Glyma.07g104800 ID=Glyma.07g104800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESERPSTINETYKQQQELEEEEEEDDDDDNEEEEEEEENNEILKRRISNHPLYGLLVEAHLDCLKVGDISNLERELKIDQMQATEKQNLGMFSQSELDLFMEAYCLALGKLKEAMVEPQQKSMAFINNMHSQLRELTKATLPAPNNAEPAAATTSSTSESKFRRKPTI*






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