|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G48550.1 | AT | Vacuolar protein sorting-associated protein 26 | JGI | N/A | IEA |
GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
GO:0007034 | GO-bp | vacuolar transport | JGI | N/A | IEA |
GO:0007165 | GO-bp | signal transduction | EnsemblGenomes | N/A | IEA |
GO:0005768 | GO-cc | endosome | EnsemblGenomes | N/A | IEA |
GO:0030904 | GO-cc | retromer complex | JGI | N/A | IEA |
GO:0008565 | GO-mf | protein transporter activity | EnsemblGenomes | N/A | IEA |
KOG2717 | KOG | Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 | JGI | N/A | IEA |
PTHR12233 | Panther | VACUOLAR PROTEIN SORTING 26 RELATED | JGI | N/A | IEA |
PTHR12233:SF2 | Panther | DOWN SYNDROME CRITICAL REGION PROTEIN 3 | JGI | N/A | IEA |
PF03643 | PFAM | Vacuolar protein sorting-associated protein 26 | JGI | N/A | IEA |
Glyma.07g102800 not represented in the dataset |
Glyma.07g102800 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.09g176200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma07g11590 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g102800.2 sequence-type=transcript locus=Glyma.07g102800 ID=Glyma.07g102800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAATATGTTAATGAGAATGAAATGATTCTCCTGACAAAAACTGTTAAACTTAGTGAGTACTGAGTAGGGAGTTGCCAGCCATGTCCGTTGAACTCAAGCTCTCTCGTTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGCAAAATCATTGTCAAAACTCAGTCTTCAATTTCCCACTATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGAGTGATAAAACAACACGACTTGGACAATGAAATGGTCATTCAATTATTTGAACGCAAACATAATATGCAC >Glyma.07g102800.3 sequence-type=transcript locus=Glyma.07g102800 ID=Glyma.07g102800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 TAAATCTGAGAGAAGAAGAGAAAGCAAAATATGTTAATGAGAATGAAATGATTCTCCTGACAAAAACTGTTAAACTTAGTGAGTACTGAGTAGGGAGTTGCCAGCCATGTCCGTTGAACTCAAGCTCTCTCGTTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGCAAAATCATTGTCAAAACTCAGTCTTCAATTTCCCACTATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGTTCGTGGAGGATCAGCTGGGGTTGTTGAGTCATTCTATGGTGTTATTAAGCCCATCCCAATTGTGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGTAAGATGATTTAATTGTGTGGTTTATCAAAATATGAATATGTGGATAAATATGGAACATGGCTTTACTCATGCAACATTTTAGATAGGTTTGAGTAAATTGGGTATTTGACTTCTCAAGTTTCATGTAATGTAGCTCAATCTTTTACTGCAGCATTGCATTGAGAAACATTTCTTAATCTCTGGATCCAAACTAAGCGATTCACTCTGATAGAAAATGGTAGTTATTTTAAAAATTATCACGGGTGGATCTAGAACACTAGTGAGAGAGGTGGCAAGTACTATTTTTTATTTTAATTTAAATTTTAAACTTTAATACATTATTAT >Glyma.07g102800.4 sequence-type=transcript locus=Glyma.07g102800 ID=Glyma.07g102800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAATATGTTAATGAGAATGAAATGATTCTCCTGACAAAAACTGTTAAACTTAGTGAGTACTGAGTAGGGAGTTGCCAGCCATGTCCGTTGAACTCAAGCTCTCTCGTTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGCAAAATCATTGTCAAAACTCAGTCTTCAATTTCCCACTATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGTAAGATGATTTAATTGTGTGGTTTATCAAAATATGAATATGTGGATAAATATGGAACATGGCTTTACTCATGCAACATTTTAGATAGGTTTGAGTAAATTGGGTATTTGACTTCTCAAGTTTCATGTAATGTAGCTCAATCTTTTACTGCAGCATTGCATTGAGAAACATTTCTTAATCTCTGGATCCAAACTAAGCGATTCACTCTGATAGAAAATGGTAGTTATTTTAAAAATTATCACGGGTGGATCTAGAACACTAGTGA
>Glyma.07g102800.1 sequence-type=CDS polypeptide=Glyma.07g102800.1.p locus=Glyma.07g102800 ID=Glyma.07g102800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCCGTTGAACTCAAGCTCTCTCGTTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGCAAAATCATTGTCAAAACTCAGTCTTCAATTTCCCACTATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGTTCGTGGAGGATCAGCTGGGGTTGTTGAGTCATTCTATGGTGTTATTAAGCCCATCCCAATTGTGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGAGTGATAAAACAACACGACTTGGACAATGA >Glyma.07g102800.2 sequence-type=CDS polypeptide=Glyma.07g102800.2.p locus=Glyma.07g102800 ID=Glyma.07g102800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGAGTGATAAAACAACACGACTTGGACAATGA >Glyma.07g102800.3 sequence-type=CDS polypeptide=Glyma.07g102800.3.p locus=Glyma.07g102800 ID=Glyma.07g102800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCCGTTGAACTCAAGCTCTCTCGTTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGCAAAATCATTGTCAAAACTCAGTCTTCAATTTCCCACTATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGTTCGTGGAGGATCAGCTGGGGTTGTTGAGTCATTCTATGGTGTTATTAAGCCCATCCCAATTGTGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGTAA >Glyma.07g102800.4 sequence-type=CDS polypeptide=Glyma.07g102800.4.p locus=Glyma.07g102800 ID=Glyma.07g102800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAATTCGCCTTACTGTCAAAGGATCCGTTAACTTGCAGGAATAGGACCATTGAGGTTAAATCTTCTGGAAAGATTGGTTCGGGTACATCGGAGATACCATTCTCAGTGAATCTTAGACAGCGGGATGAAAATTTAGAAAGATTTTATGAGACTTTCCATGGTGCAAATATTAGTATCCAGTATTTGGCAACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACAATGGAGTTCATTGTTGAAAGTGATAAAGAAAATTCAGCTGATCTTCAACAACAACCACTTTCTCCAGAGATGGCAATCTTTTACATTACCCAAGACACTCAAAGGCATCCTCTACTTCCTGAATTAAAATCTGGTGGATTTCGGGTGACAGGAAAAATCTCTACTCAATGTTCTTTGTCTGGTCCTATTAGTGGTGAGTTAACTGTAGAAACATCTGCAGTTCCAATTCATTCTATTGACATTCAGTTGTTTCGAGTTGAGTCCGTTCTTCTTGGGGAGAAAATTGTGACCGAAACCTCTCTGGTCCAAACAACACAGATAGCAGATGGAGATGTGTGCCATAATTTGACGCTGCCTATTTATGTAATACTACCACGCCTTTTGACCTGTCCAACAACCTTAGCTGGTCCCTTCTCAGTTGAGTTCAAAGTTGCCATCGTTATAAGCTTTCAGTCAGAGCTAAGTAAACTGCACAAAAAATCTGACGCCAAAACTCCGAGACTATGGCTGGCAATGGAAACATTACTGCTTGAGTTGGTTCGGACAAAGTAA
>Glyma.07g102800.1.p sequence-type=predicted peptide transcript=Glyma.07g102800.1 locus=Glyma.07g102800 ID=Glyma.07g102800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVELKLSRSNRIYRPSEALEGKIIVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFYGVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQRDENLERFYETFHGANISIQYLATVDISRGYLHKSLSATMEFIVESDKENSADLQQQPLSPEMAIFYITQDTQRHPLLPELKSGGFRVTGKISTQCSLSGPISGELTVETSAVPIHSIDIQLFRVESVLLGEKIVTETSLVQTTQIADGDVCHNLTLPIYVILPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDAKTPRLWLAMETLLLELVRTKSDKTTRLGQ* >Glyma.07g102800.2.p sequence-type=predicted peptide transcript=Glyma.07g102800.2 locus=Glyma.07g102800 ID=Glyma.07g102800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEFALLSKDPLTCRNRTIEVKSSGKIGSGTSEIPFSVNLRQRDENLERFYETFHGANISIQYLATVDISRGYLHKSLSATMEFIVESDKENSADLQQQPLSPEMAIFYITQDTQRHPLLPELKSGGFRVTGKISTQCSLSGPISGELTVETSAVPIHSIDIQLFRVESVLLGEKIVTETSLVQTTQIADGDVCHNLTLPIYVILPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDAKTPRLWLAMETLLLELVRTKSDKTTRLGQ* >Glyma.07g102800.3.p sequence-type=predicted peptide transcript=Glyma.07g102800.3 locus=Glyma.07g102800 ID=Glyma.07g102800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVELKLSRSNRIYRPSEALEGKIIVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFYGVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQRDENLERFYETFHGANISIQYLATVDISRGYLHKSLSATMEFIVESDKENSADLQQQPLSPEMAIFYITQDTQRHPLLPELKSGGFRVTGKISTQCSLSGPISGELTVETSAVPIHSIDIQLFRVESVLLGEKIVTETSLVQTTQIADGDVCHNLTLPIYVILPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDAKTPRLWLAMETLLLELVRTK* >Glyma.07g102800.4.p sequence-type=predicted peptide transcript=Glyma.07g102800.4 locus=Glyma.07g102800 ID=Glyma.07g102800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEFALLSKDPLTCRNRTIEVKSSGKIGSGTSEIPFSVNLRQRDENLERFYETFHGANISIQYLATVDISRGYLHKSLSATMEFIVESDKENSADLQQQPLSPEMAIFYITQDTQRHPLLPELKSGGFRVTGKISTQCSLSGPISGELTVETSAVPIHSIDIQLFRVESVLLGEKIVTETSLVQTTQIADGDVCHNLTLPIYVILPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDAKTPRLWLAMETLLLELVRTK*
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